Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 14,897 – 14,989 |
Length | 92 |
Max. P | 0.517590 |
Location | 14,897 – 14,989 |
---|---|
Length | 92 |
Sequences | 6 |
Columns | 92 |
Reading direction | forward |
Mean pairwise identity | 81.01 |
Mean single sequence MFE | -17.63 |
Consensus MFE | -13.83 |
Energy contribution | -13.91 |
Covariance contribution | 0.09 |
Combinations/Pair | 1.14 |
Mean z-score | -1.11 |
Structure conservation index | 0.78 |
SVM decision value | -0.03 |
SVM RNA-class probability | 0.517590 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 14897 92 + 22407834 ACAUCUAAAAAACUUUGUGUUUAAGUUAUAUUAACCUUCGCUUGCCUUUGUACAGUCGAUUUAUGCUUUUGCAUGGAUCAGGUCCAUAAGGC ..........(((((.......)))))................(((((((.((....(((((((((....)))))))))..)).)).))))) ( -18.90) >DroVir_CAF1 2583 81 + 1 ACUUUGAAAAAACCAA-----------GAGCUUACCUCCGCUUGCCCUUAUAAAGCCGAUUAAUACUUUUGCAUGGAUCUGGUCCAUAGGGA ................-----------((((........)))).((((......((.((........)).))((((((...)))))))))). ( -13.90) >DroSec_CAF1 3091 92 + 1 ACACCUAAAAAACUUUUAGUUUAGUUUAUAUUAACCUUCGCUUGCCUUUGUACAGUCGAUUUAUGCUCUUGCAUGGAUCAGGUCCAUAAGGC ...(((...(((((........))))).(((..((((..((((((....))).))).(((((((((....)))))))))))))..)))))). ( -19.20) >DroSim_CAF1 3101 92 + 1 ACACCUAAAAAACUUUUAGUUUAGUUUAUAUUAACCUUCGCUUGCCUUUGUACAGUCGAUUUAUGCUCUUGCAUGGAUCAGGUCCAUAAGGC ...(((...(((((........))))).(((..((((..((((((....))).))).(((((((((....)))))))))))))..)))))). ( -19.20) >DroEre_CAF1 3547 92 + 1 AUAUCCAAAAAGCGUUCUCUUUAAUUAAUAUUAACCUUCUCUUGCCUUUAUACAGUCGAUUUAUGCUCUUGCAUGGAUCAGGUCCAUAAGGC ...........................................(((((...((....(((((((((....)))))))))..))....))))) ( -15.90) >DroYak_CAF1 2792 92 + 1 ACAUCGAAAAAGUUAACAUCUUAAUUUAUAUUAACCUUCGCUUGCCUUUGUACAGUCGGUUUAUGCUCUUGCAUGGAUCAGGUCCAUAAGGC ....((((...(((((.((........)).))))).))))...(((((((.((....(((((((((....)))))))))..)).)).))))) ( -18.70) >consensus ACAUCUAAAAAACUUUCAGUUUAAUUUAUAUUAACCUUCGCUUGCCUUUGUACAGUCGAUUUAUGCUCUUGCAUGGAUCAGGUCCAUAAGGC ...........................................(((((.........(((((((((....)))))))))........))))) (-13.83 = -13.91 + 0.09)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:22:58 2006