Locus 2999

Sequence ID 2L_DroMel_CAF1
Location 8,559,556 – 8,559,647
Length 91
Max. P 0.831789
window4769

overview

Window 9

Location 8,559,556 – 8,559,647
Length 91
Sequences 5
Columns 107
Reading direction forward
Mean pairwise identity 80.34
Mean single sequence MFE -32.70
Consensus MFE -19.16
Energy contribution -20.04
Covariance contribution 0.88
Combinations/Pair 1.12
Mean z-score -2.11
Structure conservation index 0.59
SVM decision value 0.72
SVM RNA-class probability 0.831789
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 8559556 91 + 22407834
---------GCCCAAGGAAGCAUUAGCUCCUGUCG--GAACUCGGGCAGCAGCUGGCAGAAAGACUGGAG-----ACCGGGGCUCUCGGUGUCCGGAAUCCGAAUAA
---------......(((.((..(((((.(((((.--(....).))))).))))))).......(((((.-----((((((...)))))).)))))..)))...... ( -36.20)
>DroSec_CAF1 69237 93 + 1
-------AGGAAAAAGGAAGCAUUAGGUCCUGUCG--GAACUCGGGCAGCAGCUGGCAGAAAGAUUGGAG-----ACCGGGGCUCUCGGUGUCCGGAAUCCGAAUAA
-------........(((.((....(((.(((((.--(....).)))))..))).)).......(((((.-----((((((...)))))).)))))..)))...... ( -29.20)
>DroSim_CAF1 70562 100 + 1
AAAAAAAAGGAAAAAGGAAGCAUUAGCUCCUGUCG--GAACUCGGGCAGCAGCUGGCAGAAAGAUUGGAG-----ACCGGGGCUCUCGGUGUCCGGAAUCCGAAUAA
...............(((.((..(((((.(((((.--(....).))))).))))))).......(((((.-----((((((...)))))).)))))..)))...... ( -33.60)
>DroEre_CAF1 70815 100 + 1
GAAAAAAAGGGAAAAGGAAGCAUUAGCUCCUGUCG--GAACUCGGGCAGCAGCUGCCAGAAAGACUGGAG-----ACCGGGGCUCUCGGAGUCCGGAAUCCGAAUAA
..............((((.((....)))))).(((--((..((.(((((...))))).))....(((((.-----.(((((...)))))..)))))..))))).... ( -33.50)
>DroAna_CAF1 53965 97 + 1
-------ACAGAAAAGGAAGCAUUAGCUUCUGUCGUUGGAGUUGGGCAGCAGCUGCCAGGGAUGUCGGUGGGUAUGCCAGGA---ACGGUGCCCGGAAUCGGAAUAA
-------........((((((....))))))(((.(((((((((.....))))).)))).))).(((((((((..(((....---..)))))))...)))))..... ( -31.00)
>consensus
_______AGGAAAAAGGAAGCAUUAGCUCCUGUCG__GAACUCGGGCAGCAGCUGGCAGAAAGAUUGGAG_____ACCGGGGCUCUCGGUGUCCGGAAUCCGAAUAA
...............(((.....(((((.(((((..........))))).))))).........(((((......((((((...)))))).)))))..)))...... (-19.16 = -20.04 +   0.88)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:41:45 2006