Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 8,559,320 – 8,559,421 |
Length | 101 |
Max. P | 0.823029 |
Location | 8,559,320 – 8,559,421 |
---|---|
Length | 101 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 82.10 |
Mean single sequence MFE | -24.97 |
Consensus MFE | -17.50 |
Energy contribution | -19.20 |
Covariance contribution | 1.70 |
Combinations/Pair | 1.04 |
Mean z-score | -2.29 |
Structure conservation index | 0.70 |
SVM decision value | 0.69 |
SVM RNA-class probability | 0.823029 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 8559320 101 + 22407834 -GUUGCCAAAAAUGGGGAAAAUGG--------AGGAAAGGAC----------GCUCCAAGUUGCGAAAACUUGAGCAACCACAAAAGAAUGAAAUUCAAGUUGCUGGGGCAACAUUAACU -((((((.................--------..........----------((((.(((((.....)))))))))..((((((..((((...))))...))).)))))))))....... ( -25.70) >DroSec_CAF1 68999 107 + 1 ----GCCAAAAAUGU-GAAAAUGG--------AGGAAAGGACGACGCUCCAAGCUCCAAGUUGCGAAAACUUGAGCAACCACAAAAGAAUGAAAUUCAAGUUGCUGGGGCAACAUUAACU ----........(((-(....(((--------((............))))).((((.(((((.....)))))))))...))))...((((...))))..(((((....)))))....... ( -25.80) >DroSim_CAF1 70313 110 + 1 -GUUGCCAAAAAUGU-GAAAAUGG--------AGGAAAGGACGACGCUCCAAGCUCCAAGUUGCGAAAACUUGAACAACCACAAAAGAAUGAAAUUCAAGUUGCUGGGGCAACAUUAACU -((((((.....(((-.....(((--------((............))))).....((((((.....)))))).))).((((((..((((...))))...))).)))))))))....... ( -27.00) >DroEre_CAF1 70589 99 + 1 -GUUGCCAAAAAUGU-GA-AAUGG--------AGGAAAGGAC----------GCUCCGAGCUGCGAAAACUUGAGCAACCACAAAAGAAUGAAAUUCAAGUUGCUGGGGCAACAUUAACU -((((((........-..-..(((--------(((......)----------.))))).(((.(((....))))))..((((((..((((...))))...))).)))))))))....... ( -23.80) >DroYak_CAF1 70202 107 + 1 -GUUGCCAAAAAUGG-GA-AAUGGAAACUGGGAGGAAAGGAC----------GCUCCAAGUUGCGAAAACUUGAGCAACCACAAAAGAAUGAAAUUCAAGUUGCUGGGGCAACAUUAACU -((((((...(((..-((-(..(....)..........((..----------((((.(((((.....)))))))))..))..............)))..))).....))))))....... ( -27.10) >DroAna_CAF1 53743 87 + 1 UGUUGCCAAAAAUUG--------A--------AAGAACGG-----------------AAGUUGCAAGAACUUGAGUCACCACAAAAGAAUGAAAUUCAAGUAGCUCGGGCAACAUUAACU (((((((........--------.--------...(((..-----------------..)))((....((((((((...((........))..)))))))).))...)))))))...... ( -20.40) >consensus _GUUGCCAAAAAUGG_GA_AAUGG________AGGAAAGGAC__________GCUCCAAGUUGCGAAAACUUGAGCAACCACAAAAGAAUGAAAUUCAAGUUGCUGGGGCAACAUUAACU .((((((.............................................((((.(((((.....)))))))))..((((((..((((...))))...))).)))))))))....... (-17.50 = -19.20 + 1.70)
Location | 8,559,320 – 8,559,421 |
---|---|
Length | 101 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 82.10 |
Mean single sequence MFE | -23.55 |
Consensus MFE | -15.54 |
Energy contribution | -15.98 |
Covariance contribution | 0.45 |
Combinations/Pair | 1.14 |
Mean z-score | -2.05 |
Structure conservation index | 0.66 |
SVM decision value | 0.38 |
SVM RNA-class probability | 0.714882 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 8559320 101 - 22407834 AGUUAAUGUUGCCCCAGCAACUUGAAUUUCAUUCUUUUGUGGUUGCUCAAGUUUUCGCAACUUGGAGC----------GUCCUUUCCU--------CCAUUUUCCCCAUUUUUGGCAAC- .......((((((...(((((((((...((((......))))....)))))))...))....(((((.----------(......)))--------)))..............))))))- ( -23.10) >DroSec_CAF1 68999 107 - 1 AGUUAAUGUUGCCCCAGCAACUUGAAUUUCAUUCUUUUGUGGUUGCUCAAGUUUUCGCAACUUGGAGCUUGGAGCGUCGUCCUUUCCU--------CCAUUUUC-ACAUUUUUGGC---- ..((((.(((((....)))))))))............(((((((((..........))))).(((((...(((......)))....))--------)))....)-)))........---- ( -22.90) >DroSim_CAF1 70313 110 - 1 AGUUAAUGUUGCCCCAGCAACUUGAAUUUCAUUCUUUUGUGGUUGUUCAAGUUUUCGCAACUUGGAGCUUGGAGCGUCGUCCUUUCCU--------CCAUUUUC-ACAUUUUUGGCAAC- .......((((((...(((((((((((.((((......))))..)))))))))...))....(((((...(((......)))....))--------))).....-........))))))- ( -29.00) >DroEre_CAF1 70589 99 - 1 AGUUAAUGUUGCCCCAGCAACUUGAAUUUCAUUCUUUUGUGGUUGCUCAAGUUUUCGCAGCUCGGAGC----------GUCCUUUCCU--------CCAUU-UC-ACAUUUUUGGCAAC- .......((((((...(((((((((...((((......))))....)))))))...)).....((((.----------(......)))--------))...-..-........))))))- ( -22.70) >DroYak_CAF1 70202 107 - 1 AGUUAAUGUUGCCCCAGCAACUUGAAUUUCAUUCUUUUGUGGUUGCUCAAGUUUUCGCAACUUGGAGC----------GUCCUUUCCUCCCAGUUUCCAUU-UC-CCAUUUUUGGCAAC- .......((((((...(((((((((...((((......))))....)))))))...))((((.((((.----------(......))))).))))......-..-........))))))- ( -24.70) >DroAna_CAF1 53743 87 - 1 AGUUAAUGUUGCCCGAGCUACUUGAAUUUCAUUCUUUUGUGGUGACUCAAGUUCUUGCAACUU-----------------CCGUUCUU--------U--------CAAUUUUUGGCAACA ......(((((((((((..((((((...((((......))))....)))))).)))).(((..-----------------..)))...--------.--------........))))))) ( -18.90) >consensus AGUUAAUGUUGCCCCAGCAACUUGAAUUUCAUUCUUUUGUGGUUGCUCAAGUUUUCGCAACUUGGAGC__________GUCCUUUCCU________CCAUU_UC_ACAUUUUUGGCAAC_ .......((((((..(((((((.(((........)))...)))))))((((((.....)))))).................................................)))))). (-15.54 = -15.98 + 0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:41:44 2006