Locus 2997

Sequence ID 2L_DroMel_CAF1
Location 8,557,183 – 8,557,278
Length 95
Max. P 0.955290
window4766

overview

Window 6

Location 8,557,183 – 8,557,278
Length 95
Sequences 5
Columns 98
Reading direction forward
Mean pairwise identity 85.73
Mean single sequence MFE -15.48
Consensus MFE -13.95
Energy contribution -13.67
Covariance contribution -0.28
Combinations/Pair 1.14
Mean z-score -1.93
Structure conservation index 0.90
SVM decision value 1.45
SVM RNA-class probability 0.955290
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 8557183 95 + 22407834
AUAAUUCUCAUUCGAAAUCUCGUAAAUCAAUGUUUUUUUUU---UGUUUCUCUCUACAUUCUAAUUAUGUGAUUAAGUGAUUUAUGAGUUUUUGUGCG
............(((((.(((((((((((............---(((........)))...(((((....)))))..))))))))))).))))).... ( -15.80)
>DroSec_CAF1 66949 98 + 1
AUAAUUCUCAUUCGAAAUCUCGUAAAUCAAUGUUUUUUUUUCUCUCUCUCUCUCUACAUUCUAAUUAUGUGAUUAAGUGAUUUAUGAGUUUUUGUGCG
............(((((.(((((((((((((((......................))))..(((((....)))))..))))))))))).))))).... ( -14.75)
>DroSim_CAF1 68266 98 + 1
AUAAUUCUCAUUCGAAAUCUCGUAAAUCAAUGUUUUUUUUUCUCUCUCUCUCUCUACAUUCUAAUUAUGUGAUUAAGUGAUUUAUGAGUUUUUGUGCG
............(((((.(((((((((((((((......................))))..(((((....)))))..))))))))))).))))).... ( -14.75)
>DroEre_CAF1 68512 84 + 1
AUAAUGCUCAUUUGAAAUCUCGUAAAUCAAUUUUUUU--------------UUCUACAUUCUAAUUAUGUGAUUAAGUGAUUUAUGAGUUUUUGUGCG
.....((.((...((((.(((((((((((....(((.--------------.((.((((.......))))))..)))))))))))))))))))).)). ( -17.90)
>DroAna_CAF1 51700 82 + 1
AUAAUUCGCAUUCAAAAUCUCGUAAAUCAAUUUUUU----------------UCUACAUUCUAAUUAUGUGAUUAAGUGAUUUAUGGGUUUCUGUCCC
............((.((.(((((((((((...((..----------------((.((((.......))))))..)).))))))))))).)).)).... ( -14.20)
>consensus
AUAAUUCUCAUUCGAAAUCUCGUAAAUCAAUGUUUUUUUUU___U_U_UCUCUCUACAUUCUAAUUAUGUGAUUAAGUGAUUUAUGAGUUUUUGUGCG
............(((((.(((((((((((.......................((.((((.......)))))).....))))))))))).))))).... (-13.95 = -13.67 +  -0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:41:42 2006