Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 8,555,831 – 8,555,923 |
Length | 92 |
Max. P | 0.950341 |
Location | 8,555,831 – 8,555,923 |
---|---|
Length | 92 |
Sequences | 5 |
Columns | 103 |
Reading direction | reverse |
Mean pairwise identity | 86.62 |
Mean single sequence MFE | -12.48 |
Consensus MFE | -10.10 |
Energy contribution | -10.34 |
Covariance contribution | 0.24 |
Combinations/Pair | 1.06 |
Mean z-score | -2.14 |
Structure conservation index | 0.81 |
SVM decision value | 1.40 |
SVM RNA-class probability | 0.950341 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 8555831 92 - 22407834 --------UCCCCUCUCUAUUCCCU---GCUGUUAACACCGUUUUUUUUAUUGCAUCAUAAAUUUAAUAUUUUUAUGUAAUGUUUGUAUAACGGUACACGCUC --------.................---(((((....((((((.....((((((((...((((.....))))..)))))))).......))))))))).)).. ( -14.70) >DroSec_CAF1 65422 92 - 1 --------CCCUCUUUCUAUACCCU---GCUGUUAACACCGUUUUUUUUAUUGCAUCAUAAAUUUAAUAUUUUUAUGUAAUGUUUGUAUAACGGUACACGCUC --------.................---(((((....((((((.....((((((((...((((.....))))..)))))))).......))))))))).)).. ( -14.70) >DroSim_CAF1 66340 92 - 1 --------CCCUCUCUCUAUACUCU---GCUGUUAACACCGUUUUUUUUAUUGCAUCAUAAAUUUAAUAUUUUUAUGUAAUGUUUGUAUAACGGUACACGCUC --------.................---(((((....((((((.....((((((((...((((.....))))..)))))))).......))))))))).)).. ( -14.70) >DroWil_CAF1 53521 91 - 1 ----------CUCUCUUUGUCCUCUCUCCCUUUUAACACUCUUUUUUUUAUUGCAUCAUAAAUUUAAUAUUUUUAUGUAAUGUUUGUAUAACGGUA--CGCUU ----------........((((...........................(((((((...((((.....))))..)))))))(((.....))))).)--).... ( -6.90) >DroYak_CAF1 66592 100 - 1 CUCUCCCGCUCUCUCUCUAUUCCCU---GCUGUUAACACCGUUUUUUUUAUUGCAUCAUAAAUUUAAUAUUUUUAUGUAAUGUUUGUAUAACGCUGUACGCUU .........................---((.((..(((.((((.....((((((((...((((.....))))..)))))))).......)))).))))))).. ( -11.40) >consensus ________CCCUCUCUCUAUACCCU___GCUGUUAACACCGUUUUUUUUAUUGCAUCAUAAAUUUAAUAUUUUUAUGUAAUGUUUGUAUAACGGUACACGCUC .....................................((((((.....((((((((...((((.....))))..)))))))).......))))))........ (-10.10 = -10.34 + 0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:41:41 2006