Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 8,552,777 – 8,552,899 |
Length | 122 |
Max. P | 0.953885 |
Location | 8,552,777 – 8,552,884 |
---|---|
Length | 107 |
Sequences | 4 |
Columns | 109 |
Reading direction | reverse |
Mean pairwise identity | 89.64 |
Mean single sequence MFE | -27.30 |
Consensus MFE | -19.31 |
Energy contribution | -20.88 |
Covariance contribution | 1.56 |
Combinations/Pair | 1.04 |
Mean z-score | -1.71 |
Structure conservation index | 0.71 |
SVM decision value | 0.05 |
SVM RNA-class probability | 0.557669 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 8552777 107 - 22407834 CAUUCAUUCCCAUC--CAUCCCCUUUGGCUAGGAACCUCGUGUCGCCAGCGGGAUUGUCAACGCCGUUGACCUCAUCUCCACCGUCCAACUGCAAUAAGCCUCGAAUGG (((((.........--((..(((.(((((((.(.....).))..))))).)))..)).....((.((((((............)).)))).))..........))))). ( -22.80) >DroSec_CAF1 62420 106 - 1 CAUUCAUUCCCGUC--CAACCCCU-UGGCCAGGAACCUCCUGUCGCCACCGGGAUUGUCAACGCCGUUGACCUCAUCUCCACCGUCCAACUGCAAUAAGCCUCGAAUGG (((((.........--((((((..-((((((((.....))))..))))..))).))).....((.((((((............)).)))).))..........))))). ( -27.40) >DroSim_CAF1 63342 106 - 1 CAUUCAUUCCCAUC--CAUCCCCU-UGGCCAGAAACCUCCUGUCGCCAGCGGGAUUGUCAACGCCGUUGACCUCAUCUCCACCGUCCAACUGCAAUAAGCCUCGAAUGG (((((.........--.(((((.(-(((((((.......)))..))))).))))).......((.((((((............)).)))).))..........))))). ( -25.70) >DroYak_CAF1 63593 109 - 1 CAUUCAUUCAUUCCCACAUCCCCUUUGGACAGAAACCUCCAGUCGCCAGUGGGGUUGUCAACGCCGUUGACCUCAUCUCCACUGUCCAAUGGCUUUAAGCCUCGAAUGG ....(((((...............((((((((.((((.(((.(....).)))))))((((((...))))))..........)))))))).(((.....)))..))))). ( -33.30) >consensus CAUUCAUUCCCAUC__CAUCCCCU_UGGCCAGAAACCUCCUGUCGCCAGCGGGAUUGUCAACGCCGUUGACCUCAUCUCCACCGUCCAACUGCAAUAAGCCUCGAAUGG (((((...............(((.(((((((((.....))))..))))).)))...((((((...))))))................................))))). (-19.31 = -20.88 + 1.56)
Location | 8,552,807 – 8,552,899 |
---|---|
Length | 92 |
Sequences | 4 |
Columns | 94 |
Reading direction | forward |
Mean pairwise identity | 89.05 |
Mean single sequence MFE | -31.44 |
Consensus MFE | -24.61 |
Energy contribution | -25.92 |
Covariance contribution | 1.31 |
Combinations/Pair | 1.08 |
Mean z-score | -1.91 |
Structure conservation index | 0.78 |
SVM decision value | 0.67 |
SVM RNA-class probability | 0.818776 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 8552807 92 + 22407834 GAGAUGAGGUCAACGGCGUUGACAAUCCCGCUGGCGACACGAGGUUCCUAGCCAAAGGGGAUG--GAUGGGAAUGAAUGGAUGGGGACAUCCAU ........(((..(((((..........)))))..))).....(((((((.(((.......))--).)))))))..(((((((....))))))) ( -32.10) >DroSec_CAF1 62450 91 + 1 GAGAUGAGGUCAACGGCGUUGACAAUCCCGGUGGCGACAGGAGGUUCCUGGCCA-AGGGGUUG--GACGGGAAUGAAUGGAUGGGGACAUCCAU .........(((....((((..(((((((..((((..((((.....))))))))-.)))))))--))))....)))(((((((....))))))) ( -37.60) >DroSim_CAF1 63372 91 + 1 GAGAUGAGGUCAACGGCGUUGACAAUCCCGCUGGCGACAGGAGGUUUCUGGCCA-AGGGGAUG--GAUGGGAAUGAAUGGAUAGGGACAUCCAU ........((((((...)))))).(((((..((((..(((((...)))))))))-..)))))(--((((..................))))).. ( -27.47) >DroYak_CAF1 63623 94 + 1 GAGAUGAGGUCAACGGCGUUGACAACCCCACUGGCGACUGGAGGUUUCUGUCCAAAGGGGAUGUGGGAAUGAAUGAAUGGAUGGGGACAUCCCC ........((((((...))))))...(((((.((.(((.....))).))((((.....)))))))))...........(((((....))))).. ( -28.60) >consensus GAGAUGAGGUCAACGGCGUUGACAAUCCCGCUGGCGACAGGAGGUUCCUGGCCA_AGGGGAUG__GAUGGGAAUGAAUGGAUGGGGACAUCCAU ........((((((...))))))..((((..((((..(((((...)))))))))..))))................(((((((....))))))) (-24.61 = -25.92 + 1.31)
Location | 8,552,807 – 8,552,899 |
---|---|
Length | 92 |
Sequences | 4 |
Columns | 94 |
Reading direction | reverse |
Mean pairwise identity | 89.05 |
Mean single sequence MFE | -25.78 |
Consensus MFE | -20.09 |
Energy contribution | -21.52 |
Covariance contribution | 1.44 |
Combinations/Pair | 1.12 |
Mean z-score | -2.65 |
Structure conservation index | 0.78 |
SVM decision value | 1.44 |
SVM RNA-class probability | 0.953885 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 8552807 92 - 22407834 AUGGAUGUCCCCAUCCAUUCAUUCCCAUC--CAUCCCCUUUGGCUAGGAACCUCGUGUCGCCAGCGGGAUUGUCAACGCCGUUGACCUCAUCUC (((((((....)))))))...........--.(((((..(((((((.(.....).))..))))).))))).((((((...))))))........ ( -23.60) >DroSec_CAF1 62450 91 - 1 AUGGAUGUCCCCAUCCAUUCAUUCCCGUC--CAACCCCU-UGGCCAGGAACCUCCUGUCGCCACCGGGAUUGUCAACGCCGUUGACCUCAUCUC (((((((....)))))))...........--...(((..-((((((((.....))))..))))..)))...((((((...))))))........ ( -28.30) >DroSim_CAF1 63372 91 - 1 AUGGAUGUCCCUAUCCAUUCAUUCCCAUC--CAUCCCCU-UGGCCAGAAACCUCCUGUCGCCAGCGGGAUUGUCAACGCCGUUGACCUCAUCUC (((((((....)))))))...........--.(((((.(-(((((((.......)))..))))).))))).((((((...))))))........ ( -25.50) >DroYak_CAF1 63623 94 - 1 GGGGAUGUCCCCAUCCAUUCAUUCAUUCCCACAUCCCCUUUGGACAGAAACCUCCAGUCGCCAGUGGGGUUGUCAACGCCGUUGACCUCAUCUC ((((....))))...............(((((.......(((((........)))))......)))))(..((((((...))))))..)..... ( -25.72) >consensus AUGGAUGUCCCCAUCCAUUCAUUCCCAUC__CAUCCCCU_UGGCCAGAAACCUCCUGUCGCCAGCGGGAUUGUCAACGCCGUUGACCUCAUCUC (((((((....))))))).................(((.(((((((((.....))))..))))).)))...((((((...))))))........ (-20.09 = -21.52 + 1.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:41:39 2006