Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 8,552,064 – 8,552,158 |
Length | 94 |
Max. P | 0.569480 |
Location | 8,552,064 – 8,552,158 |
---|---|
Length | 94 |
Sequences | 6 |
Columns | 94 |
Reading direction | reverse |
Mean pairwise identity | 98.58 |
Mean single sequence MFE | -26.02 |
Consensus MFE | -24.95 |
Energy contribution | -24.82 |
Covariance contribution | -0.14 |
Combinations/Pair | 1.04 |
Mean z-score | -0.78 |
Structure conservation index | 0.96 |
SVM decision value | 0.07 |
SVM RNA-class probability | 0.569480 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 8552064 94 - 22407834 GCGGGGCAGUCAAGUGCUGCGAAAUGUGAAAAAGUAAAUAAGUUUUCGCCGGCGUUGCACUUUUAAUGUUUUCCUGGCAACAUCUGGCCAAGAC ..((((((...((((((.(((....(((((((..(....)..)))))))...))).))))))....)))..)))((((........)))).... ( -25.60) >DroSec_CAF1 61616 94 - 1 GCGGGGCAGUCAAGUGCUGCGAAAUGUGAAAAAGUAAAUAAGUUUUCGCCGGCGUUGCACUUUUAAUGUUUUCCUGGCAACAUCUGGCCAAGAC ..((((((...((((((.(((....(((((((..(....)..)))))))...))).))))))....)))..)))((((........)))).... ( -25.60) >DroSim_CAF1 62418 94 - 1 GCGGGGCAGUCAAGUGCUGCGAAAUGUGAAAAAGUAAAUAAGUUUUCGCCGGCGUUGCACUUUUAAUGUUUUCCUGGCAACAUCUGGCCAAGAC ..((((((...((((((.(((....(((((((..(....)..)))))))...))).))))))....)))..)))((((........)))).... ( -25.60) >DroEre_CAF1 63145 94 - 1 GCGGGGCAGUCAAGUGCUGCGAAAUGUGAAAAAGUAAAUAAGUUUUCGCCGGCGUUGCACUUUUAAUGUUUUCCUGGCAACAUCUGGCCAAGAC ..((((((...((((((.(((....(((((((..(....)..)))))))...))).))))))....)))..)))((((........)))).... ( -25.60) >DroYak_CAF1 62779 94 - 1 GCGGGGCAGUCAAGUGCUGCGAAAUGUGAAAAAGUAAAUAAGUUUUCGCCGGCGUUGCACUUUUAAUGUUUUCCUGGCAACAUCUGGCCAAGAC ..((((((...((((((.(((....(((((((..(....)..)))))))...))).))))))....)))..)))((((........)))).... ( -25.60) >DroAna_CAF1 46686 94 - 1 CCGGGGCAGUCAAGUGCUGCGAAAUGUGAAAAAGUAAAUAAGUUUUCGCCGCCGUUGCACUUUUAAUGUUUUCCCGGCAACAUCUGGCCAGGAC ((((((((...((((((.(((....(((((((..(....)..)))))))...))).))))))....)))...)))(((........))).)).. ( -28.10) >consensus GCGGGGCAGUCAAGUGCUGCGAAAUGUGAAAAAGUAAAUAAGUUUUCGCCGGCGUUGCACUUUUAAUGUUUUCCUGGCAACAUCUGGCCAAGAC ..((((((...((((((.(((....(((((((..(....)..)))))))...))).))))))....)))...)))(((........)))..... (-24.95 = -24.82 + -0.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:41:37 2006