Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 8,543,371 – 8,543,491 |
Length | 120 |
Max. P | 0.723496 |
Location | 8,543,371 – 8,543,491 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 94.30 |
Mean single sequence MFE | -26.48 |
Consensus MFE | -22.99 |
Energy contribution | -23.79 |
Covariance contribution | 0.80 |
Combinations/Pair | 1.00 |
Mean z-score | -1.33 |
Structure conservation index | 0.87 |
SVM decision value | 0.41 |
SVM RNA-class probability | 0.723496 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 8543371 120 + 22407834 CAUUCGAAAAUUUAACGCCCGCGCUGCUGCAGCGCGUUGUUGCUCCGGUUGGAAAAUAUCUGAAAACAGCAUUAAUAAAUAAACAAAAAUAUUGGAUAAAUCGCCGGUAGAAACGCUGCA ................((.(((((((...)))))))..(((.(((((((..((...((((..(............................)..))))..))))))).)).)))...)). ( -24.89) >DroSec_CAF1 52731 116 + 1 CAUUCGAAAAUUUAACGCCCGCGCUGCUGCAGCGCGUAGUUGCUCCGGUUGGAAAAUAUCUGAAAACAGCAUUAAC----AAACAAAAAUAUUGGAUAAAUCGCCGGAAAAAACGCAGCA ......................(((((.(((((.....)))))((((((..((...((((..(.............----...........)..))))..))))))))......))))). ( -27.16) >DroSim_CAF1 52147 116 + 1 CAUUCGAAAAUUUAACGCCCGCGCUGCUGCAGCGCGUAGUUGCUCCGGUUGGAAAAUAUCUGAAAACAGCAUUAAU----AAACAAAAAUAUUGGAUAAAUCGCCGGAAAAAACGCAGCA ......................(((((.(((((.....)))))((((((..((...((((..(.............----...........)..))))..))))))))......))))). ( -27.16) >DroEre_CAF1 54205 116 + 1 CAUUCGAAAAUUUAACGCCCGCGCUGCUGCAGCGCG---UUGCUCCGGUUGGAAAAUAUCUGAGAACAGCAUUAAUAAAUAAACAAAAAUAUUGGAUAAAUCGCCGGAA-AAACGCAGCA ....................((((((...))))(((---((..((((((..((...((((..(............................)..))))..)))))))).-.))))).)). ( -26.99) >DroYak_CAF1 53692 116 + 1 CAUUCGAAAAUUUAACGCCCGCGCUGCUGCAGCGCG---UUGCUCCGGUUGGAAAAUAUCUGAAAACAGCAUUAAUAAAUAAACAAAAAUAUUGGAUAAAUCGCCGGAA-AAACGCAGCA ....................((((((...))))(((---((..((((((..((...((((..(............................)..))))..)))))))).-.))))).)). ( -26.19) >consensus CAUUCGAAAAUUUAACGCCCGCGCUGCUGCAGCGCGU_GUUGCUCCGGUUGGAAAAUAUCUGAAAACAGCAUUAAUAAAUAAACAAAAAUAUUGGAUAAAUCGCCGGAA_AAACGCAGCA ...................(((((((...)))))))..(((((((((((..((...((((..(............................)..))))..))))))))......))))). (-22.99 = -23.79 + 0.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:41:31 2006