Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 8,542,799 – 8,542,917 |
Length | 118 |
Max. P | 0.804769 |
Location | 8,542,799 – 8,542,917 |
---|---|
Length | 118 |
Sequences | 5 |
Columns | 119 |
Reading direction | forward |
Mean pairwise identity | 76.22 |
Mean single sequence MFE | -27.78 |
Consensus MFE | -12.58 |
Energy contribution | -13.02 |
Covariance contribution | 0.44 |
Combinations/Pair | 1.21 |
Mean z-score | -1.99 |
Structure conservation index | 0.45 |
SVM decision value | 0.63 |
SVM RNA-class probability | 0.804769 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 8542799 118 + 22407834 UCAGUCAACGAAAAGG-AAAUAGUGAGAGGAGAGGGCUUAUUGAAGAGAGCCUCUCAUUUUAAAAUUUCUCUUUAAGCGUGUUCCUUCUAAAGGACACAAGAAACUAAUAUGUUUAUGA (((...((((.(((((-((((..(((((.((((((.(((........))))))))).)))))..))))).))))....((((.(((.....)))))))............))))..))) ( -30.10) >DroSec_CAF1 52167 118 + 1 UCAGUUGUUGAGAACA-AAAUAGUGAGAGGAGAGAGUUUAUUGAAGAGAGACUUUCAUUUUAAACAUUCUCUUAAAGCUUGUCCCUUCUAAAGGACACAAGAAACUAAUAUUUUUAUAA ..((((.(((......-....(((...(((((((.(((((.(((((......)))))...))))).)))))))...)))(((((........))))))))..))))............. ( -25.00) >DroSim_CAF1 51581 118 + 1 UCAGUUGUUGAGAACA-AAAUAGUGAGAGGAGAGAGUUUAUUGAAGAGAGCCUUUCAUUUUAAACAUUCUCUUAAAGCUUGUCCCUUCUAAAGGACACAAGAAACUAAUAUUUUUAUGA ..((((.(((......-....(((...(((((((.(((((.(((((......)))))...))))).)))))))...)))(((((........))))))))..))))............. ( -25.00) >DroEre_CAF1 53584 113 + 1 UA-GUUGACAAGGAGAAAGAAAUUGAGAGCAGAGGU----UUGAAGAGAGCCUUUCGUUUUGAAAUUUCUCUUAAGCCCUGUUCCUGAUGAGGGACACAAAAACCU-CGAUUUUUCUAA ..-..........(((((((.(((..((((((.(((----((((.(((((..((((.....)))).))))))))))))))))))..)))((((..........)))-)..))))))).. ( -33.30) >DroYak_CAF1 53240 116 + 1 UAGGUUUAUGAGGCAAAAGAAAGUGAGAGGAGAGAGUUUAUUGGAGAGAGCCAUUCAUUUAGAAAAUUCUCUUAAGCUUUGUUCGCAAUAAAGGACACAAAAACCA-CGAUUUUUGU-- ..(((((.((.........(((((.....((((((((((.(((((..((....))..))))).))))))))))..)))))((((........)))).)).))))).-..........-- ( -25.50) >consensus UCAGUUGAUGAGAACA_AAAUAGUGAGAGGAGAGAGUUUAUUGAAGAGAGCCUUUCAUUUUAAAAAUUCUCUUAAAGCUUGUUCCUUCUAAAGGACACAAGAAACUAAUAUUUUUAUAA ......................(((((((((((((((...((((((.(((...))).))))))..))))))))......(((((........))))).............))))))).. (-12.58 = -13.02 + 0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:41:30 2006