Locus 2988

Sequence ID 2L_DroMel_CAF1
Location 8,535,872 – 8,535,978
Length 106
Max. P 0.607061
window4752

overview

Window 2

Location 8,535,872 – 8,535,978
Length 106
Sequences 6
Columns 113
Reading direction reverse
Mean pairwise identity 81.15
Mean single sequence MFE -25.14
Consensus MFE -15.30
Energy contribution -17.00
Covariance contribution 1.70
Combinations/Pair 1.17
Mean z-score -1.81
Structure conservation index 0.61
SVM decision value 0.15
SVM RNA-class probability 0.607061
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 8535872 106 - 22407834
GAGAAUCCGAGUCCGAAAAUCGUUG-UUGUGUUGUAACA--AUGCUUUGAUUAAUUUAUGAUUUCUGUUU----GGGAAUAAUAAAUUAAAUUCGGAUUUGUUCGACGAGGAC
..((((((((((.((((...(((((-(((.....)))))--))).)))).(((((((((.((((((....----)))))).)))))))))))))))))))((((.....)))) ( -28.80)
>DroPse_CAF1 15720 89 - 1
-AGAAUGGGAGCA----------GG-UUGAUUUGUAA-A--AUGUUUUGAUUAAUUUGUUGCUUCUGUUAAAAGGGGGGAAAUCAAUUACAUCCAGAUUUCGGC---------
-..((((((((((----------((-((((((.....-.--.......)))))))...))))))))))).........((((((...........))))))...--------- ( -16.82)
>DroSec_CAF1 45197 106 - 1
GAGAAUCCGAGUCCGAAAAUCGUUG-UUGUGUUGUAACA--AUGCUUUGAUUAAUUUAUGAUUUCUGUUU----GGGAAUAAUAAAUUAAAUUCGGAUUUGUUUCACGAGGAC
..(((..((((((((((...(((((-(((.....)))))--)))......(((((((((.((((((....----)))))).))))))))).)))))))))).)))........ ( -29.30)
>DroSim_CAF1 44485 106 - 1
GAGAAUCCGAGUCCGAAAAUCGUUG-UUGUGUUGUAACA--AUGCUUUGAUUAAUUUAUGAUUUCUGUUU----GGGAAUAAUAAAUUAAAUUCGGAUUUGUUCGACGAGGAC
..((((((((((.((((...(((((-(((.....)))))--))).)))).(((((((((.((((((....----)))))).)))))))))))))))))))((((.....)))) ( -28.80)
>DroEre_CAF1 46231 107 - 1
GAGAAUCCGAGUCCGAUAAUCGUUU-UUGUGUUGUAACA-AUUGCUUUGAUUAAUUUAUGAUUUCUGUUU----GGGAAUAAUAAAUUAAAUUCGGAUUUGUGCGACGACGAC
.......(((((((((.....((..-((((......)))-)..)).....(((((((((.((((((....----)))))).)))))))))..)))))))))............ ( -25.50)
>DroYak_CAF1 46001 109 - 1
GAGAAUCCGAGUCCGAAAAUCGUUUUUUGUGUUGUAACGUAAUGCUUUGAUUAAUUUAUGAUUGCUGUUU----GGGAAUAAUAAAUUAAAUUCAGAUUUGUGCGACGACGAC
.((((..(((.........)))..)))).((((((..((((....((((((((((((((.(((.((....----)).))).)))))))))..)))))....)))))))))).. ( -21.60)
>consensus
GAGAAUCCGAGUCCGAAAAUCGUUG_UUGUGUUGUAACA__AUGCUUUGAUUAAUUUAUGAUUUCUGUUU____GGGAAUAAUAAAUUAAAUUCGGAUUUGUGCGACGAGGAC
.......((((((((((....((....(((......)))....)).....(((((((((.((((((........)))))).))))))))).))))))))))............ (-15.30 = -17.00 +   1.70)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:41:29 2006