Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 8,530,275 – 8,530,366 |
Length | 91 |
Max. P | 0.663667 |
Location | 8,530,275 – 8,530,366 |
---|---|
Length | 91 |
Sequences | 6 |
Columns | 96 |
Reading direction | reverse |
Mean pairwise identity | 76.45 |
Mean single sequence MFE | -20.53 |
Consensus MFE | -6.79 |
Energy contribution | -8.35 |
Covariance contribution | 1.56 |
Combinations/Pair | 1.28 |
Mean z-score | -2.46 |
Structure conservation index | 0.33 |
SVM decision value | 0.27 |
SVM RNA-class probability | 0.663667 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 8530275 91 - 22407834 AC-GACC--AAAAACUAAUCGUGGGGAUAUAUACAAUCAAUCAAAUUUGUGUCGAAAGGCAUGAUAAACAGAAACAGUUGGGUCGACUAAAUA--A .(-((((--...((((..(((((........)))............(..((((....))))..)......))...)))).)))))........--. ( -20.90) >DroSec_CAF1 39524 91 - 1 AC-GACC--AAAAACUAAUCGUGGGGAUAUAUACAAUCAAUCAAAAUUGUGUCAAAAGGCAUGAUAAACAGAAACGGUUGCGUGGACUAAAUA--U ..-..((--(.....(((((((...(((.......))).......((..((((....))))..))........)))))))..)))........--. ( -14.20) >DroSim_CAF1 38846 91 - 1 AC-GACC--AAAAACUAAUCGUGGGGAUAUAUACAAUCAAUCAAAAUUGUGUCGAAAGGCAUGAUAAACAGAAACGGUUGGGUCGACUAAAUA--A .(-((((--...((((..(((((........)))...........((..((((....))))..)).....))...)))).)))))........--. ( -22.20) >DroEre_CAF1 39461 93 - 1 ACCAAGC-GAAAAACUAAUCGCUGGGAUAUAUACAAUCAAUCAAAAUUGUGUUGAAAAGCAUGAUAACCAGAAAUGGCUGUGGCGAUUAUAUA--U .((.(((-((........))))).))..(((((.((((.......((..((((....))))..))..(((....))).......)))).))))--) ( -23.80) >DroYak_CAF1 40224 92 - 1 GC-GGCC-AAAAAACUAAUCGCUGGGAUAUAUACAAUCAAUCAAAAUUGUGUCGAAAGGCAUGAUAAUCAGAAGCGGUUGUGGCCAUUGUAUA--U ..-((((-(......((((((((..(((.......))).......((..((((....))))..)).......)))))))))))))........--. ( -26.90) >DroAna_CAF1 23045 91 - 1 AC-GACAUGUCUAACUAAUCGCCAGGAUCUG-GUAAUCAAUCAUAAUUGUGUUGCAUUACU---UAUCUGGAAAAUAUAUGUUUCAUUAAAUAUGA ..-(((((((...........(((((....(-((((((((.(((....)))))).))))))---..))))).....)))))))((((.....)))) ( -15.19) >consensus AC_GACC__AAAAACUAAUCGCGGGGAUAUAUACAAUCAAUCAAAAUUGUGUCGAAAGGCAUGAUAAACAGAAACGGUUGGGUCGACUAAAUA__A ...............(((((((...(((.......))).......((((((((....))))))))........)))))))................ ( -6.79 = -8.35 + 1.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:41:26 2006