Locus 2984

Sequence ID 2L_DroMel_CAF1
Location 8,526,265 – 8,526,356
Length 91
Max. P 0.714356
window4746

overview

Window 6

Location 8,526,265 – 8,526,356
Length 91
Sequences 6
Columns 93
Reading direction forward
Mean pairwise identity 92.21
Mean single sequence MFE -19.05
Consensus MFE -16.53
Energy contribution -16.92
Covariance contribution 0.39
Combinations/Pair 1.10
Mean z-score -1.57
Structure conservation index 0.87
SVM decision value 0.38
SVM RNA-class probability 0.714356
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 8526265 91 + 22407834
UAUAAAAUCAAUCCAGAUAUUCAUAUGUAUAGGCCAAGAGUUUAGUUUUGGUUAGUGCUACAUGAGUUGGAACAAUUUGAUUUAGUUUUU--G
....(((((((((((...((((((..((((..(((((((......)))))))..))))...)))))))))).....))))))).......--. ( -22.10)
>DroSec_CAF1 35468 91 + 1
UAUAAAAUCAAUCCAGAUAUUCAUAUGUAUAGGCCAAGAGUUUAGUUUUGGUUAGUGCUACAUGAGUUGGAACAAUUUCAUUUAGUUUUU--C
...........((((...((((((..((((..(((((((......)))))))..))))...))))))))))...................--. ( -18.90)
>DroSim_CAF1 34763 91 + 1
UAUAAAAUCAAUCCAGAUAUUCAUAUGUAUAGGCCAAGAGUUUAGUUUUGGUUAGUGCUACAUGAGUUGGAACAAUUUCAUUUAGUUUUU--G
...........((((...((((((..((((..(((((((......)))))))..))))...))))))))))...................--. ( -18.90)
>DroEre_CAF1 35363 89 + 1
UAUAAAAUCAAUCCAGAUAUUCAUAUGUAUAGGCCAAGAGUUUAGUUUUGGUUAGUGCUACAUGAGUUGGAACAAUUCGAUUUAGUUUU----
...........((((...((((((..((((..(((((((......)))))))..))))...))))))))))..................---- ( -18.90)
>DroYak_CAF1 36117 89 + 1
UAUAAAAUCAAUCCAGAUAUUCAUAUGUAUAGGCCAAGAGUUUAGUUUUGGUUAGUGCUACAUGAGUUGGAACAAUUUGAUUUCUUUUU----
....(((((((((((...((((((..((((..(((((((......)))))))..))))...)))))))))).....)))))))......---- ( -21.50)
>DroAna_CAF1 18996 93 + 1
UAUAAAAUCAUAUCAGUUAUCCAAAUACAUAGGCCAAGAGUUUAGUUUUGGUUAGUGCUAAGUGAGUUGGAACAAUUUGAAUUAGUUUUUAGG
..(((((.....((((...(((((.(((.((((((((((......))))))).....))).)))..))))).....))))......))))).. ( -14.00)
>consensus
UAUAAAAUCAAUCCAGAUAUUCAUAUGUAUAGGCCAAGAGUUUAGUUUUGGUUAGUGCUACAUGAGUUGGAACAAUUUGAUUUAGUUUUU__G
...........((((...((((((..((((..(((((((......)))))))..))))...))))))))))...................... (-16.53 = -16.92 +   0.39)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:41:23 2006