Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 8,521,874 – 8,521,986 |
Length | 112 |
Max. P | 0.657752 |
Location | 8,521,874 – 8,521,986 |
---|---|
Length | 112 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 87.36 |
Mean single sequence MFE | -31.68 |
Consensus MFE | -25.74 |
Energy contribution | -26.93 |
Covariance contribution | 1.19 |
Combinations/Pair | 1.07 |
Mean z-score | -1.49 |
Structure conservation index | 0.81 |
SVM decision value | 0.16 |
SVM RNA-class probability | 0.612288 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 8521874 112 + 22407834 UUUACAAUA------CAAUAUCAGCUGACCACAUUUGAGUUUGCUGUACAAA-AUACCGUUAGCGGUGCACUCAACAGCUGAGCGGCGCUCAAGCUAACCCGCCGAUAAUGCAGACAAC- .........------.....(((((((.......((((((.((((((((...-.....))..)))))).))))))))))))).(((((............)))))..............- ( -27.01) >DroSec_CAF1 31102 118 + 1 UUUGCAAUGCCUUUACAAUAUCAGCUGACUACAUUUGAGUUUGGUGUACAAA-AUACCGUUAGCGGUGCACUCAACAGCUGAGCGGCGCUCAAGCCAAGCCGCCGAUAAUGCAGACAAC- ((((((..............(((((((.......(((((((((.....))).-.(((((....))))).)))))))))))))(((((((....))...)))))......))))))....- ( -36.11) >DroSim_CAF1 30405 112 + 1 UUUGCAAUG------CAAUAUCAGCUGACUACAUUUGAGUUUGGUGUAAAAA-AUACCGUUAGCGGUGCACUCAACAGCUGAGCAGCGCUCAAGCCAAGCCGCCGAUAAUGCAGACAAC- .(((...((------((.((((.((((((.((......))..(((((.....-)))))))))))((((..((.....(((((((...)))).)))..)).)))))))).))))..))).- ( -31.50) >DroEre_CAF1 30674 109 + 1 UUUACAAUG------GGGUAUCAGCUGACUGCGUUUGAGUUUGGCGUACAAAUAUACCGUUACCGCUGCACUCAACAGCUGAGCGGCGC-----CCAAGCCGCCGAUAAUGCAGACAACC .......((------..((((((((((.......((((((.(((((.((.........))...))))).)))))))))))))(((((..-----....)))))......)))...))... ( -32.11) >consensus UUUACAAUG______CAAUAUCAGCUGACUACAUUUGAGUUUGGUGUACAAA_AUACCGUUAGCGGUGCACUCAACAGCUGAGCGGCGCUCAAGCCAAGCCGCCGAUAAUGCAGACAAC_ ((((((..............(((((((..((((((.......))))))......(((((....))))).......)))))))(((((...........)))))......))))))..... (-25.74 = -26.93 + 1.19)
Location | 8,521,874 – 8,521,986 |
---|---|
Length | 112 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 87.36 |
Mean single sequence MFE | -36.15 |
Consensus MFE | -28.46 |
Energy contribution | -29.15 |
Covariance contribution | 0.69 |
Combinations/Pair | 1.10 |
Mean z-score | -1.58 |
Structure conservation index | 0.79 |
SVM decision value | 0.26 |
SVM RNA-class probability | 0.657752 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 8521874 112 - 22407834 -GUUGUCUGCAUUAUCGGCGGGUUAGCUUGAGCGCCGCUCAGCUGUUGAGUGCACCGCUAACGGUAU-UUUGUACAGCAAACUCAAAUGUGGUCAGCUGAUAUUG------UAUUGUAAA -......((((.((((((((((((....(((((...)))))(((((.((((..((((....))))))-))...))))).)))))...((....))))))))).))------))....... ( -33.50) >DroSec_CAF1 31102 118 - 1 -GUUGUCUGCAUUAUCGGCGGCUUGGCUUGAGCGCCGCUCAGCUGUUGAGUGCACCGCUAACGGUAU-UUUGUACACCAAACUCAAAUGUAGUCAGCUGAUAUUGUAAAGGCAUUGCAAA -((((.(((((((.(((((((((((((......))))...)))))))))((((((((....))))..-...))))..........))))))).)))).....((((((.....)))))). ( -38.20) >DroSim_CAF1 30405 112 - 1 -GUUGUCUGCAUUAUCGGCGGCUUGGCUUGAGCGCUGCUCAGCUGUUGAGUGCACCGCUAACGGUAU-UUUUUACACCAAACUCAAAUGUAGUCAGCUGAUAUUG------CAUUGCAAA -.((((.((((.(((((((((((....(((((.((.((((((...))))))))((((....))))..-.............)))))....)))).))))))).))------))..)))). ( -36.30) >DroEre_CAF1 30674 109 - 1 GGUUGUCUGCAUUAUCGGCGGCUUGG-----GCGCCGCUCAGCUGUUGAGUGCAGCGGUAACGGUAUAUUUGUACGCCAAACUCAAACGCAGUCAGCUGAUACCC------CAUUGUAAA (((((.((((.(((((((((((....-----..))))))..(((((.....)))))))))).((..((....))..))..........)))).))))).......------......... ( -36.60) >consensus _GUUGUCUGCAUUAUCGGCGGCUUGGCUUGAGCGCCGCUCAGCUGUUGAGUGCACCGCUAACGGUAU_UUUGUACACCAAACUCAAAUGUAGUCAGCUGAUAUUG______CAUUGCAAA .((((.(((((((.(((((((((.(((.........))).)))))))))((((((((....))))......))))..........))))))).))))....................... (-28.46 = -29.15 + 0.69)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:41:16 2006