Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 8,520,956 – 8,521,116 |
Length | 160 |
Max. P | 0.993778 |
Location | 8,520,956 – 8,521,076 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 91.00 |
Mean single sequence MFE | -40.12 |
Consensus MFE | -35.56 |
Energy contribution | -36.68 |
Covariance contribution | 1.12 |
Combinations/Pair | 1.06 |
Mean z-score | -2.01 |
Structure conservation index | 0.89 |
SVM decision value | 2.42 |
SVM RNA-class probability | 0.993778 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 8520956 120 - 22407834 CCCAGCUUAAACAACCAAGGGCAGGUGGUAAAGUGGGCAAAUGGAUACCAAAUCGUUUUGGUCACCGGAAUCGUAUGGUUAUGAUGGAUGCCCAACUUGACCGCCUUCCCAAAGGUGAUG .............(((..(((.(((((((.(((((((((..(((..((((((....))))))..)))..((((((....))))))...))))).)))).))))))).)))...))).... ( -45.30) >DroSec_CAF1 30196 120 - 1 CCCAGCUUAAACAACCAAGGGCAGGUGGUAAAGUGGGCAAAUGGAUACCAAAUCGUUUUGGUCACCGGAAUCUUAUGGUUAUGAGCGAUGCCCAACUUGACCGCUUCCCCAAAGGUAAUG .............(((..(((.(((((((.(((((((((..(((..((((((....))))))..))).((((....))))........))))).)))).))))))).)))...))).... ( -39.80) >DroSim_CAF1 29529 120 - 1 CCCAGCUUAAACAACCAAGGGCAGGUGGUAAAGUGGGCAAAUGGAUACCAAAUCGUUUUGGUCACCGGAAUCUUAUGGUUAUGAGCGAUGCCCAACUUGACCGCUUCCCCAAAGGUGAUG .............(((..(((.(((((((.(((((((((..(((..((((((....))))))..))).((((....))))........))))).)))).))))))).)))...))).... ( -39.80) >DroEre_CAF1 29824 120 - 1 CCGAGCUUGAACAACCAAAGGCUGGUGGUGAAGUGGGCAAAUGGAUACCAAAUCGUUUUGGUCACCGGAAUCUUAUUGUUAUGACAGAUGCCCAACCCGACCCCAUCCCCGUAGGUAACU .............(((...((.(((.(((....((((((..(((..((((((....))))))..)))........((((....)))).)))))).....))))))...))...))).... ( -30.60) >DroYak_CAF1 30657 120 - 1 CCCAGCUUGAACAGCCACGGGCAGGUGGUAAAGUGGGCAAAGGGAUACCAAAUCGUUUUGGUCACCGGAAUCUUAUGGUUGUGAUCGAUGCCCAACUUGACCGCUUCCCCGAAGGUGAUG .((.(((.....)))..((((.(((((((.(((((((((..((....))........((((((((...((((....))))))))))))))))).)))).))))))).))))..))..... ( -45.10) >consensus CCCAGCUUAAACAACCAAGGGCAGGUGGUAAAGUGGGCAAAUGGAUACCAAAUCGUUUUGGUCACCGGAAUCUUAUGGUUAUGAGCGAUGCCCAACUUGACCGCUUCCCCAAAGGUGAUG .............(((..(((.(((((((.(((((((((...((..((((((....))))))..))..((((....))))........))))).)))).))))))).)))...))).... (-35.56 = -36.68 + 1.12)
Location | 8,520,996 – 8,521,116 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 93.17 |
Mean single sequence MFE | -27.46 |
Consensus MFE | -22.38 |
Energy contribution | -23.54 |
Covariance contribution | 1.16 |
Combinations/Pair | 1.06 |
Mean z-score | -1.40 |
Structure conservation index | 0.82 |
SVM decision value | 0.11 |
SVM RNA-class probability | 0.590593 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 8520996 120 + 22407834 AACCAUACGAUUCCGGUGACCAAAACGAUUUGGUAUCCAUUUGCCCACUUUACCACCUGCCCUUGGUUGUUUAAGCUGGGUUGCAUAUUUUAUCAUCUGAUUCCUGGUUUCUUCUUCGAU (((((...((.((.((((((((((....))))))........((((((((.((.(((.......))).))..))).)))))............)))).)).)).)))))........... ( -26.60) >DroSec_CAF1 30236 120 + 1 AACCAUAAGAUUCCGGUGACCAAAACGAUUUGGUAUCCAUUUGCCCACUUUACCACCUGCCCUUGGUUGUUUAAGCUGGGGUGCAUAUUCUAUCAUCUGAUUCCUGGUUUCUUCUUCGAU (((((...((.((.(((((............((((......))))............((((((..(((.....)))..))).))).......))))).)).)).)))))........... ( -27.30) >DroSim_CAF1 29569 120 + 1 AACCAUAAGAUUCCGGUGACCAAAACGAUUUGGUAUCCAUUUGCCCACUUUACCACCUGCCCUUGGUUGUUUAAGCUGGGGUGCAUAUUCUAUCAUCUGAUUCCUGGUUUCUUCUUCGAU (((((...((.((.(((((............((((......))))............((((((..(((.....)))..))).))).......))))).)).)).)))))........... ( -27.30) >DroEre_CAF1 29864 120 + 1 AACAAUAAGAUUCCGGUGACCAAAACGAUUUGGUAUCCAUUUGCCCACUUCACCACCAGCCUUUGGUUGUUCAAGCUCGGCUGUAUAUUUUAUCAUCUGAUACCGGGUUACUUCUUUGAU ..(((.(((..(((((((((((((....))))))......................(((((...((((.....)))).))))).................)))))))...)))..))).. ( -26.30) >DroYak_CAF1 30697 120 + 1 AACCAUAAGAUUCCGGUGACCAAAACGAUUUGGUAUCCCUUUGCCCACUUUACCACCUGCCCGUGGCUGUUCAAGCUGGGCUGCAUAUUUUAUCACCUGAUUCCUGGUUUCUUCUUUGAU (((((...((.((.((((((((((....))))))........((((((((((((((......)))).))...))).)))))............)))).)).)).)))))........... ( -29.80) >consensus AACCAUAAGAUUCCGGUGACCAAAACGAUUUGGUAUCCAUUUGCCCACUUUACCACCUGCCCUUGGUUGUUUAAGCUGGGCUGCAUAUUUUAUCAUCUGAUUCCUGGUUUCUUCUUCGAU (((((...((.((.((((((((((....))))))........((((((((.((.(((.......))).))..))).)))))............)))).)).)).)))))........... (-22.38 = -23.54 + 1.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:41:14 2006