| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 861,985 – 862,098 |
| Length | 113 |
| Max. P | 0.775698 |
| Location | 861,985 – 862,098 |
|---|---|
| Length | 113 |
| Sequences | 4 |
| Columns | 113 |
| Reading direction | reverse |
| Mean pairwise identity | 97.49 |
| Mean single sequence MFE | -35.00 |
| Consensus MFE | -34.00 |
| Energy contribution | -34.00 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.03 |
| Mean z-score | -1.79 |
| Structure conservation index | 0.97 |
| SVM decision value | 0.54 |
| SVM RNA-class probability | 0.775698 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 861985 113 - 22407834 CAGACAUCAGCAGUUCCGUCUAGGAUGCUAGUCCUGGUCACUAGCGAUCGGAUUGGCUCCAAUACCUUGCACUCGCUCGCAGGAGUGUGCAAACCAGAACUAACCUUAAGACU ...........(((((......(((.((((((((.((((......)))))))))))))))......((((((..((((....))))))))))....)))))............ ( -35.40) >DroSec_CAF1 4418 113 - 1 CAGACACCAGCAGUUCCGUCUAGGAUGCUAGUCCUGGUCACUAGCGAUCGGAUUGGCUCCAAUACCUUGCACUCGCUCGCAGGAGUGUGCAAACCAGAACUAACCUUAAGACU ...........(((((......(((.((((((((.((((......)))))))))))))))......((((((..((((....))))))))))....)))))............ ( -35.40) >DroEre_CAF1 1869 113 - 1 CAGACAUCAGCAGUUCCGUCUAGGAUGCUAAUCCUGGUCACCAGCGAUCGGAUUGGCUCCAAUACUUUGCACUCGCUCGCAGGAGUGUGCAAACCAGAACUAACCUUAAGACU ...........(((((......(((.((((((((.((((......))))))))))))))).....(((((((..((((....)))))))))))...)))))............ ( -36.00) >DroYak_CAF1 1881 113 - 1 CAGACAUCAGCAGUUCCGUCUAGGAUGCUAAUCGUGGUCACCAGCGAUCGGAUUGGCUCCAAUACCUUGCACUCGCUCGCAGGAGUGUGCAAACCAGAACUAACCUUAAGACU ...........(((((......(((.(((((((.(((((......)))))))))))))))......((((((..((((....))))))))))....)))))............ ( -33.20) >consensus CAGACAUCAGCAGUUCCGUCUAGGAUGCUAAUCCUGGUCACCAGCGAUCGGAUUGGCUCCAAUACCUUGCACUCGCUCGCAGGAGUGUGCAAACCAGAACUAACCUUAAGACU ...........(((((......(((.((((((((.((((......)))))))))))))))......((((((..((((....))))))))))....)))))............ (-34.00 = -34.00 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:32:25 2006