Locus 2977

Sequence ID 2L_DroMel_CAF1
Location 8,517,321 – 8,517,416
Length 95
Max. P 0.919119
window4725

overview

Window 5

Location 8,517,321 – 8,517,416
Length 95
Sequences 5
Columns 95
Reading direction reverse
Mean pairwise identity 87.47
Mean single sequence MFE -21.71
Consensus MFE -15.74
Energy contribution -16.74
Covariance contribution 1.00
Combinations/Pair 1.15
Mean z-score -2.48
Structure conservation index 0.72
SVM decision value 1.13
SVM RNA-class probability 0.919119
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 8517321 95 - 22407834
ACAACAAAUCACUACAUUUUCCAACACUGCCGGCUUGCCAGCAAAAACAGAUGUUCUGUUCGUGUUUUUUCACCCAUUUCCAGGCACUGUUUACA
......................((((.((((((....))((((..(((((.....)))))..))))................)))).)))).... ( -19.40)
>DroSec_CAF1 26625 89 - 1
AUAACAAGUCAAUACAUUUUCCAACACUGGCGGCCUGCCAGCGAAAACAGCUGUUCUG------UUUCUUCAGUCAUUUCCAGGCAGUGUUUACA
.......((.(((((.....(((....)))..(((((.((((.......))))..(((------......))).......))))).))))).)). ( -20.50)
>DroSim_CAF1 26319 95 - 1
AUAACAAGUCAAUACAUUUUCCAACACUGGCGGCCUGCCAGUGAAAACAGCUGUUCUGUUCGUGUUUCUUCACCCAUUUUCAGGCAGUGUUUACA
.......((.(((((.........(((((((.....)))))))......(((.........(((......))).........))).))))).)). ( -22.57)
>DroEre_CAF1 26365 95 - 1
ACAACAACCCAUUACAUUUUCCAACACUGCCGGCAAGCCAGCAAAAACAGCUGUUCUGUUCGUGUUUUUUCACCCAUUUCCAGGCAGUGUUUACA
......................(((((((((((....))((((..(((((.....)))))..))))................))))))))).... ( -23.80)
>DroYak_CAF1 27244 94 - 1
ACAACAACCCAAUAUAUUUUCCAACACUGCCGGCAAGCCAGCAA-AACAGCUGUUCUGUUCGUGUUUUUUCACCCAUUUCCAGGCGGUGUUUACA
......................(((((((((((((...((((..-....))))...)))).(((......))).........))))))))).... ( -22.30)
>consensus
ACAACAACUCAAUACAUUUUCCAACACUGCCGGCAUGCCAGCAAAAACAGCUGUUCUGUUCGUGUUUUUUCACCCAUUUCCAGGCAGUGUUUACA
......................(((((((((((....))((((..(((((.....)))))..))))................))))))))).... (-15.74 = -16.74 +   1.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:41:02 2006