Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 8,515,029 – 8,515,123 |
Length | 94 |
Max. P | 0.500000 |
Location | 8,515,029 – 8,515,123 |
---|---|
Length | 94 |
Sequences | 5 |
Columns | 106 |
Reading direction | reverse |
Mean pairwise identity | 88.40 |
Mean single sequence MFE | -30.84 |
Consensus MFE | -21.64 |
Energy contribution | -22.56 |
Covariance contribution | 0.92 |
Combinations/Pair | 1.07 |
Mean z-score | -1.71 |
Structure conservation index | 0.70 |
SVM decision value | -0.07 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 8515029 94 - 22407834 GACUCCGCCUGUAAA---AAGCCGCCUACAGCUGGCUUGGUGGUGGCAAAGGCCUUCGAUAAAUUAUC---------GAUUUCCUUGUCACGAUAUACGGCUUCUG ......(((.(((..---(((((((.....)).))))).((.(((((((.((...((((((...))))---------))...))))))))).)).))))))..... ( -31.20) >DroSec_CAF1 24339 94 - 1 GACUCCGCCUGUAAA---AAGCCGCCUACAGCUGGCUUGGUCGUGGCACAGGCCUUCGAUAAGUUAUC---------GAGUUCCUUGUCACGAUAUACGGCUUCUG ......(((.(((..---(((((((.....)).))))).(((((((((.(((..(((((((...))))---------)))..)))))))))))).))))))..... ( -36.00) >DroSim_CAF1 24026 94 - 1 GACUCCGCCUGUAAA---AAGCCGCCUACAGCUGGCUUGGUGGUGGCACAGGCCUUCGAUAAGUUAUC---------GAUUUCCUUGUCACGAUAUACGGCUUCUG ......(((.(((..---(((((((.....)).))))).((.((((((.(((...((((((...))))---------))...))))))))).)).))))))..... ( -31.20) >DroEre_CAF1 24061 104 - 1 GACUCCGCCUGUAAA--AAAGCCGCUUACAGCUGGCUUGGCGAUGGCACAGACCUUCGAUAAGUUAUCGAUGUUAUCGAUAUCCUUGUCACGAUAUAUGGCUUCGU ((..((((((((...--.(((((((.....)).))))).)))..)))..........((((((.(((((((...)))))))..)))))).........))..)).. ( -29.30) >DroYak_CAF1 24951 97 - 1 GACUCCGCCUGUAAAAAAAAGCCGCCUACAGCUGGCUUGGUGGUGGCACAGGCCUUCGAUAAGUUAUC---------GAUUUCUUUGUCCCGAUAUAUGGCCUCUC ......(((((((.....(((((((.....)).)))))..(((.((((.(((...((((((...))))---------))..))).))))))).)))).)))..... ( -26.50) >consensus GACUCCGCCUGUAAA___AAGCCGCCUACAGCUGGCUUGGUGGUGGCACAGGCCUUCGAUAAGUUAUC_________GAUUUCCUUGUCACGAUAUACGGCUUCUG ((..((((((((......(((((((.....)).))))).((....))))))))....((((((..(((((.....)))))...)))))).........))..)).. (-21.64 = -22.56 + 0.92)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:41:01 2006