Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 8,514,307 – 8,514,424 |
Length | 117 |
Max. P | 0.576317 |
Location | 8,514,307 – 8,514,424 |
---|---|
Length | 117 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 82.28 |
Mean single sequence MFE | -33.30 |
Consensus MFE | -25.55 |
Energy contribution | -26.68 |
Covariance contribution | 1.13 |
Combinations/Pair | 1.08 |
Mean z-score | -1.52 |
Structure conservation index | 0.77 |
SVM decision value | 0.09 |
SVM RNA-class probability | 0.576317 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 8514307 117 + 22407834 UCAGCUUGUAUUACUUCGUCU---UCUUCCUCUAUUUCUUCACCAUCGUCCAGUUCAAUGCCCAGGUGCUGCUCGCGCAUCGCCGUCAGCCUGGCGGUUUGCUCCAGCACCUGUUGGAAC .....................---........................((((((.....)).(((((((((...(((.(((((((......))))))).)))..))))))))).)))).. ( -32.30) >DroSec_CAF1 23617 117 + 1 UCAGCUUGUAGUACUUCGUCU---UCUUCCUCCUUUUCCUCACCAUCGUCCAGUUCGAUGCCCAGGUGCUGCUCGCGCAUCGCCGUCAGCGUGGCGGUUUGCUCCAGCACCUGUUGGAAC .....................---...........((((....(((((.......)))))..(((((((((...(((.(((((((......))))))).)))..)))))))))..)))). ( -37.20) >DroSim_CAF1 23292 117 + 1 UCAGCUUGUAGUGCUUCGUCU---UCUCCCUCCUCUUCCUCACCAUCGUCCAAUUCGAUGCCCAGGUGCUGCUCGCGCAUCGCCGUCAGCGUGGCGGUUUGCUCCAGCACCUGUUGGAAC ..(((.......)))......---...........((((....(((((.......)))))..(((((((((...(((.(((((((......))))))).)))..)))))))))..)))). ( -38.60) >DroAna_CAF1 9555 114 + 1 UCAU------UCUCUUCCUCUGGAUCCUCCUCCUGUUCGUCGCCCUCGUCCAGCUCGAUACCCAGGUGCUGUUCCCGUAUCGCCGUCAUCUGUGCAGUCUGCUCCAACAGCUGCUGGAAG ....------...(((((...((.........(((..((.......))..)))..((((((...((.......)).)))))))).........((((.(((......))))))).))))) ( -25.10) >consensus UCAGCUUGUAGUACUUCGUCU___UCUUCCUCCUUUUCCUCACCAUCGUCCAGUUCGAUGCCCAGGUGCUGCUCGCGCAUCGCCGUCAGCGUGGCGGUUUGCUCCAGCACCUGUUGGAAC ................................................(((((.........(((((((((...(((.(((((((......))))))).)))..)))))))))))))).. (-25.55 = -26.68 + 1.13)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:41:00 2006