Locus 2974

Sequence ID 2L_DroMel_CAF1
Location 8,513,710 – 8,513,818
Length 108
Max. P 0.707172
window4722

overview

Window 2

Location 8,513,710 – 8,513,818
Length 108
Sequences 5
Columns 108
Reading direction forward
Mean pairwise identity 90.04
Mean single sequence MFE -29.16
Consensus MFE -21.12
Energy contribution -21.48
Covariance contribution 0.36
Combinations/Pair 1.12
Mean z-score -2.03
Structure conservation index 0.72
SVM decision value 0.37
SVM RNA-class probability 0.707172
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 8513710 108 + 22407834
UCUUCUUUCUCCGAAUCCGAGUCUGAAUCGCUGGCAGGUUCUAUGCCACUUUUUGCCACGAAUUCGGAUUCAUCUAUUUCGCUGGCCGCCUCAUCUGGAUCUUGAUCA
...........(((((((((((((((((((.((((((((.....)))......))))))).)))))))))).........((.....)).......)))).))).... ( -28.50)
>DroSec_CAF1 23023 108 + 1
UCUUCUUUCUCCGAGUCCGAGUCUGAAUCGCUGGCGGGUUCAAUGCCACUUUUUGCGACAAAUUCGGACUCAUCUAUUUCGCUGGCCGCCUCAUCUGGAUCUUGAUUG
...((....(((((((((((((.((..(((((((((.......)))))......)))))).)))))))))).........((.....)).......)))....))... ( -30.30)
>DroSim_CAF1 22698 108 + 1
UCUUCUUUUUCCGAGUCCGAGUCUGAAUCGCUGGCGGGUUCUAUGCCACUUUUUGCGACAAAUUCGGACUCAUCUAUUUCGCUGGCCGCCUCAUCUGGAUCUUGAUCG
...((....(((((((((((((.((..(((((((((.......)))))......)))))).)))))))))).........((.....)).......)))....))... ( -31.00)
>DroEre_CAF1 22750 102 + 1
UCUUCUUUCUCCGAGUCCGAGUCUGAAUCGCUGGCGGGUUCUAUGCCACUUUUUGCCACGAAUUCAGACUCGUCUAUUUCGCUGGCUGCCUCCU------CUUGAUCA
............(((..(((((((((((((.((((((((.....)))......))))))).)))))))))))........((.....))...))------)....... ( -29.90)
>DroYak_CAF1 23623 102 + 1
UCGUCUUUCUCCGAGUCCGAGUCUGAAUCGCUGGCUGGUUCUAUGCCACUUUUUGCCACAAAUUCGGACUCAUCUAUUUCGCUGGCCGCAUCCU------CUUGAUCA
............(((...((((((((((...((((((((.....))))......))))...)))))))))).........((.....))...))------)....... ( -26.10)
>consensus
UCUUCUUUCUCCGAGUCCGAGUCUGAAUCGCUGGCGGGUUCUAUGCCACUUUUUGCCACAAAUUCGGACUCAUCUAUUUCGCUGGCCGCCUCAUCUGGAUCUUGAUCA
...........((((...((((((((((...((((((((.....)))......)))))...)))))))))).........((.....))...........)))).... (-21.12 = -21.48 +   0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:40:59 2006