Locus 2973

Sequence ID 2L_DroMel_CAF1
Location 8,511,452 – 8,511,566
Length 114
Max. P 0.594362
window4721

overview

Window 1

Location 8,511,452 – 8,511,566
Length 114
Sequences 5
Columns 117
Reading direction forward
Mean pairwise identity 89.32
Mean single sequence MFE -48.84
Consensus MFE -35.46
Energy contribution -35.26
Covariance contribution -0.20
Combinations/Pair 1.23
Mean z-score -1.76
Structure conservation index 0.73
SVM decision value 0.12
SVM RNA-class probability 0.594362
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 8511452 114 + 22407834
CGGCCGGCUUUGCCUUAGACUUCUUCGCCGCUGGUGCGGGGGCAGCCGGCGACUCAGGAGGAGCCAAAAUUAGUGGGCGCUUGGCCGCUUUUGACUGCUUCUUCUCG---GCUCCCU
..(((((((..((((..((.....)).((((....)))))))))))))))((((.(((((((((....(..(((((.(....).)))))..)....))))))))).)---).))... ( -48.20)
>DroSec_CAF1 20619 114 + 1
CGGCAGACUUUGCCUUAGACUUCUUCGCCGCUGGUGGGGGAGCAGCCGGCGACUCAGGAGGAGCCAAAAUUAGUGGCCGCUUGGCCGCUUUUGACUGCUUCUUCUCG---GCGCCCU
.(((((...)))))...(.((((((((((...)))))))))))....((((.((.(((((((((....(..(((((((....)))))))..)....))))))))).)---))))).. ( -51.00)
>DroSim_CAF1 20291 114 + 1
CGGCAGACUUUGCCUUAGACUUCUUCGCCGCUGGUGGGGGAGCAGCCGGCGACUCAGGAGGAGCCAAAAUUAGUGGCCGCUUGGCCGCUUUUGACUGCUUCUUCUCG---GCGCCCU
.(((((...)))))...(.((((((((((...)))))))))))....((((.((.(((((((((....(..(((((((....)))))))..)....))))))))).)---))))).. ( -51.00)
>DroEre_CAF1 20215 114 + 1
CCGUUGGCUUUGCCUUAGAUUUUUUCGCCGCUGGUGGGGGUGCAGCCGGCGACUCAGGAGGAGCCAGAAUCAGUGGCCUCUUGGCCGGUUUUGACUGCUUCUUCUCG---GUUUCCU
.((((((((.(((((..((.....)).(((....)))))))).))))))))(((.((((((((((((((((...((((....)))))))))))...))))))))).)---))..... ( -45.90)
>DroYak_CAF1 21178 117 + 1
CCGCUGGCUUUGCCUUAGACUUUUUCGCCGCUGGUGGAGGAGCAGCCGGCGACUCAGGUGGAGCUAGAAUCAGUGGCCUCUUGGCCGCCUUUGACGGUUUCUUCUCGGCGGCUUCCU
((((((((((..(((.((......(((((((((.(.....).))).)))))))).)))..)))).(((((((((((((....))))))...)))....))))...))))))...... ( -48.10)
>consensus
CGGCAGGCUUUGCCUUAGACUUCUUCGCCGCUGGUGGGGGAGCAGCCGGCGACUCAGGAGGAGCCAAAAUUAGUGGCCGCUUGGCCGCUUUUGACUGCUUCUUCUCG___GCUCCCU
..((.((..(((((.....((((((((((...)))))))))).....))))).))(((((((((.......(((((((....))))))).......))))))))).....))..... (-35.46 = -35.26 +  -0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:40:58 2006