Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 8,511,236 – 8,511,375 |
Length | 139 |
Max. P | 0.865595 |
Location | 8,511,236 – 8,511,335 |
---|---|
Length | 99 |
Sequences | 5 |
Columns | 117 |
Reading direction | reverse |
Mean pairwise identity | 84.34 |
Mean single sequence MFE | -26.42 |
Consensus MFE | -16.42 |
Energy contribution | -16.82 |
Covariance contribution | 0.40 |
Combinations/Pair | 1.00 |
Mean z-score | -2.37 |
Structure conservation index | 0.62 |
SVM decision value | 0.59 |
SVM RNA-class probability | 0.791918 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 8511236 99 - 22407834 AAGCCAAAAAAGAGCCAGCACCAGCAAAGAAGUCUGUGCAAGAUCCCGUACCUUCUAUUAAGAAGG------------UUCCUGCAGCUAAAAAGUCAGGACAAACUGC------UG ...............(((((...(((.((....)).)))..........(((((((....))))))------------)(((((..(((....)))))))).....)))------)) ( -23.40) >DroSec_CAF1 20403 99 - 1 AAGCCAAAAAAGAGCAAGCACCAGCAAAGAAGUCUGUGCAAGAUCCCGUACCUUCUAUAAAGAAGG------------UUCCUGCAGCUAAAAAGUCAGGACAAACUGC------UG ............((((.((((..((......))..))))..........(((((((....))))))------------)(((((..(((....)))))))).....)))------). ( -24.20) >DroSim_CAF1 20075 99 - 1 AAGCAAAAAAAGAGCAAGCACCAGCAAAGAAGUCUGUGCAAGAUCCCGUACCUUCUAUAAAGAAGG------------UUCCUGCAGCUAAAAAGUCAGGACAAACUGC------UG ............((((.((((..((......))..))))..........(((((((....))))))------------)(((((..(((....)))))))).....)))------). ( -24.20) >DroEre_CAF1 19981 117 - 1 AAGCCAAAAAAGAGCAAGCACCAGCCAAGAAGUCUGUCCAACAACCCGCACCUUCUAUAAAGAAGGCUGCCCAGGUAGCUCCUGCUGCUAAGAAGUCAGGACAAACUAAAAAGACUG ..(((......).))......((((.....(((.(((((........(((((((((....)))))).)))...((((((....)))))).........))))).))).....).))) ( -30.40) >DroYak_CAF1 20947 111 - 1 AAGCCAAAAAAGAGCAAGCACCAGCCAAGAAGUCUGUCCAAGAUCCCGCACCUUCUACUAAGAAGGCUGCCCAAGUGGCUCCUGAAGCUAAAAAGUCAGGACAAACUGC------UU ..(((......).))(((((...((((.(..((((.....))))..)(((((((((....)))))).))).....))))((((((..........)))))).....)))------)) ( -29.90) >consensus AAGCCAAAAAAGAGCAAGCACCAGCAAAGAAGUCUGUGCAAGAUCCCGUACCUUCUAUAAAGAAGG____________UUCCUGCAGCUAAAAAGUCAGGACAAACUGC______UG .................((((..((......))..))))...........((((((....)))))).............(((((..(((....))))))))................ (-16.42 = -16.82 + 0.40)
Location | 8,511,267 – 8,511,375 |
---|---|
Length | 108 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 89.62 |
Mean single sequence MFE | -31.04 |
Consensus MFE | -24.11 |
Energy contribution | -24.86 |
Covariance contribution | 0.75 |
Combinations/Pair | 1.00 |
Mean z-score | -2.12 |
Structure conservation index | 0.78 |
SVM decision value | 0.85 |
SVM RNA-class probability | 0.865595 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 8511267 108 + 22407834 AA------------CCUUCUUAAUAGAAGGUACGGGAUCUUGCACAGACUUCUUUGCUGGUGCUGGCUCUUUUUUGGCUUUCACAGGAGCAGCUUUAGUCUUUUUCUCUUGCUUUUUCGG .(------------((((((....))))))).((..(....(((.(((.......(((((.((((.(((((...((.....)).))))))))).))))).......))))))..)..)). ( -29.94) >DroSec_CAF1 20434 108 + 1 AA------------CCUUCUUUAUAGAAGGUACGGGAUCUUGCACAGACUUCUUUGCUGGUGCUUGCUCUUUUUUGGCUUCCACAGGAGCAGCUUUAGUCUUUUUCACUUGCUUUUUCGG .(------------((((((....))))))).((..(....(((.((........(((((.(((.((((((...(((...))).))))))))).)))))........)))))..)..)). ( -30.09) >DroSim_CAF1 20106 108 + 1 AA------------CCUUCUUUAUAGAAGGUACGGGAUCUUGCACAGACUUCUUUGCUGGUGCUUGCUCUUUUUUUGCUUCCACAGGAGCAGCUUUAGUCUUUUUCACUUGCUUUUUCGG .(------------((((((....))))))).((..(....(((.((........(((((.(((.((((((.............))))))))).)))))........)))))..)..)). ( -27.81) >DroYak_CAF1 20978 120 + 1 AGCCACUUGGGCAGCCUUCUUAGUAGAAGGUGCGGGAUCUUGGACAGACUUCUUGGCUGGUGCUUGCUCUUUUUUGGCUUCAACAGGAGCAGCUUUAGUCUUUUUCUCUUGCUUUUUCGG .(((.....))).(((((((....)))))))(((((((((.....)))......((((((.(((.((((((..(((....))).))))))))).))))))......))))))........ ( -36.30) >consensus AA____________CCUUCUUAAUAGAAGGUACGGGAUCUUGCACAGACUUCUUUGCUGGUGCUUGCUCUUUUUUGGCUUCCACAGGAGCAGCUUUAGUCUUUUUCACUUGCUUUUUCGG ..............((((((....))))))..((..(....(((.(((.......(((((.(((.((((((.............))))))))).))))).......))))))..)..)). (-24.11 = -24.86 + 0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:40:57 2006