Locus 2968

Sequence ID 2L_DroMel_CAF1
Location 8,504,368 – 8,504,461
Length 93
Max. P 0.928659
window4715

overview

Window 5

Location 8,504,368 – 8,504,461
Length 93
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 77.34
Mean single sequence MFE -25.60
Consensus MFE -13.30
Energy contribution -12.70
Covariance contribution -0.60
Combinations/Pair 1.18
Mean z-score -2.19
Structure conservation index 0.52
SVM decision value 1.19
SVM RNA-class probability 0.928659
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 8504368 93 - 22407834
AAUUCACUUGAGCAUCACCAAAAAAAUGGCUUAAGCCCCAAAAAUACGAAAUACAUAGACGCAUAG--AAGCUUAGGAAACUUUUUGGGCCAAAA-------------------------
......(((((((...............))))))).((((((((................((....--..))...(....)))))))))......------------------------- ( -16.96)
>DroSec_CAF1 13645 115 - 1
AAUUCACUUGAGCAUGGCCAAAA--AGGGCUUAAGCCCCAAAAAUACGAAAUACAUAGACGCAUAG--AAGCUUAGGGAACUUUUUGGGCCAAAAUGUUGCUCAACACACUUGCUCCAA-
.........((((((((((....--.((((....))))((((((................((....--..))...(....))))))))))))...((((....))))....)))))...- ( -28.10)
>DroSim_CAF1 13267 115 - 1
AAUUCACUUGAGCAUGGCCAAAA--AGGGCUUAAGCGCCAAAAAUACGAAAUACAUAGACGCAUAG--AAGCUUAGGGAACUUUUUGGGCCAAAAUGUUGCUCAACACACUUGCUCCAA-
.........((((((((((((((--((..(((((((..............................--..)))))))...)))))).)))))...((((....))))....)))))...- ( -27.95)
>DroEre_CAF1 13266 104 - 1
AAUUCACUUGAGCAUGGCGAAAA--GGGGCUUAAG-CCCCAAAAUUCGAAAAACACCGACGCAUAGGAAAGCUUAGGGAACUUUUGGGCCAAAAAUG-------------UUUCCCAACC
..(((.(((((((....((((..--(((((....)-))))....)))).......((........))...))))))))))...(((((.((....))-------------...))))).. ( -29.00)
>DroYak_CAF1 14033 103 - 1
AACUCACUUAAGCAUGGCGAAAA--GGGACUUAGGUCCCCAAAAUACGAAAUACAUAGACGCCUAG--AAGCUUAGGGAACUUUUGGGACCAAAAUG-------------UUUCUCAACC
......(((((((..((((....--(((((....)))))........(.....).....))))...--..)))))))(((((((((....))))).)-------------)))....... ( -26.00)
>consensus
AAUUCACUUGAGCAUGGCCAAAA__AGGGCUUAAGCCCCAAAAAUACGAAAUACAUAGACGCAUAG__AAGCUUAGGGAACUUUUUGGGCCAAAAUG_____________UUGCUCAAA_
......(((((((...............)))))))..(((((((................((........))...(....))))))))................................ (-13.30 = -12.70 +  -0.60)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:40:52 2006