Locus 2967

Sequence ID 2L_DroMel_CAF1
Location 8,504,142 – 8,504,256
Length 114
Max. P 0.611718
window4714

overview

Window 4

Location 8,504,142 – 8,504,256
Length 114
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 89.33
Mean single sequence MFE -34.00
Consensus MFE -24.71
Energy contribution -24.31
Covariance contribution -0.40
Combinations/Pair 1.21
Mean z-score -1.79
Structure conservation index 0.73
SVM decision value 0.16
SVM RNA-class probability 0.611718
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 8504142 114 + 22407834
UUUCAUCUGCAAUUGUCCCCAGUU-UGUUUUUUGGCAUUCUCAUUGCCU-UGGGGC-AUGUUAAUUUUCGAAGGGGAUUCC---CCUGCCCUGCGGUGAUUAGUAUGCACAUGUGAGACG
((((((.((.(((((....)))))-.........((((.((.((..((.-((((((-.((........)).(((((...))---))))))))).))..)).)).)))).)).)))))).. ( -33.20)
>DroSec_CAF1 13420 111 + 1
UUUCAUCUGCAAUAGUAUUUAUUU-UGUUU----GCAUUCUCAUUGCCU-UGGGGCAAUGUUAAUUUUCGUAGGGGAUUCC---CCUGCUCUGCGGUGAUUAGUAUGCACAUGUGAGUCG
.(((((.((((.((.((.((((..-....(----(((....(((((((.-...))))))).........(((((((...))---)))))..)))))))).)).))))))...)))))... ( -31.30)
>DroSim_CAF1 13042 111 + 1
UUUCAUCUGCAAUUGUCCCCAGUU-UGUUU----GCAUUCUCAUUGCCU-UGGGGCAAUGUUAAUUUUCGUAGGGGAUUCC---CCUGCUCUGCGGUGAUUAGUAUGCACAUGUGAGUCG
.(((((.(((((((((((((((..-.....----..(((..(((((((.-...)))))))..)))....(((((((...))---))))).))).)).)).)))).))))...)))))... ( -34.50)
>DroEre_CAF1 13037 114 + 1
UCUCAUCUGCAAUUGUCCCCAGUU-UGUUU----GCAUUGCCAUUGCCUUUGGAGC-GUGUUAAUUUUCGAAGGGGAUUCCAUUCCUGCCCGGCGGUGAUUAGCAUGCACAUGUGAGUCG
.(((((.((((((((....)))).-((((.----.(((((((....(((((((((.-((....)))))))))))(((......))).....)))))))...))))))))...)))))... ( -31.80)
>DroYak_CAF1 13823 111 + 1
UCUCAUCUGCAACUGUCCCCAGUUUUGUUU----GCAUUGUCAUUGCCU-UGGGGC-GUGUUAAUUUUCGUAGGGGAUUCC---CCUGCCCUGCGGUGAUUAGCAUGCACAUGUGAGUCG
.(((((.((........((((((..((...----.......))..))..-))))((-(((((((((.((((((((.(....---..).)))))))).))))))))))).)).)))))... ( -39.20)
>consensus
UUUCAUCUGCAAUUGUCCCCAGUU_UGUUU____GCAUUCUCAUUGCCU_UGGGGC_AUGUUAAUUUUCGUAGGGGAUUCC___CCUGCCCUGCGGUGAUUAGUAUGCACAUGUGAGUCG
.(((((.(((......(((((.............(((.......)))...)))))..(((((((((.((((((((.(.........).)))))))).))))))))))))...)))))... (-24.71 = -24.31 +  -0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:40:51 2006