Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 8,501,331 – 8,501,447 |
Length | 116 |
Max. P | 0.913167 |
Location | 8,501,331 – 8,501,447 |
---|---|
Length | 116 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 88.57 |
Mean single sequence MFE | -25.62 |
Consensus MFE | -19.54 |
Energy contribution | -20.50 |
Covariance contribution | 0.96 |
Combinations/Pair | 1.04 |
Mean z-score | -2.18 |
Structure conservation index | 0.76 |
SVM decision value | 1.09 |
SVM RNA-class probability | 0.913167 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 8501331 116 - 22407834 AACACACACUGUAUCGAAUUGUGGCUGGCAAAAGCAA----AGAGAAAAGAUUCAUCCCAACAAUUCUGAAUCACCGGAGGCUAAUUCACAAAUUCCCACAGUUUGCAUACAGAAAUGUG ..((((..((((((((((((((((((......)))..----........((((((............))))))...((((.............))))))))))))).))))))...)))) ( -29.02) >DroSec_CAF1 10801 115 - 1 AACA--CACUGUAUCGAAUUGUGGCUGGCAAAAGCAA---AAGAGAAAAGAUCCAUCCGAACAAUUCUGAAUCACCGGAGGCUAAUUCACAAAUUCCCACAGUUUGCAUACAGAAAUGUG ..((--((((((((((((((((((((.((....))..---.)).(((.....((.((((................))))))....)))........)))))))))).))))))...)))) ( -29.29) >DroSim_CAF1 10352 115 - 1 AACA--CACUGUAUCGAAUUGCGGCUGGCAAAAGCAA---AAGAGAAAAGAUCCAUCCGAACAAUUCUGAAUCACCGGAGGCUAAUUCACAAAUUCCCACAGUUUGCAUACAGAAAUGUG ..((--(((((((((((((((.((((.((....))..---.)).(((.....((.((((................))))))....)))........)).))))))).))))))...)))) ( -25.39) >DroEre_CAF1 10361 108 - 1 AAC----AAUGUAUCGAAUUGUGGCAGGCACAACCA----CAGAGAAAAGA----UCCCAACAAUUCCGAAUCACCGGAGGCUAAUUCACAAAUUCCCACAGUUUGCAUACAGAAAUGUG .((----(.(((((((((((((((..((.....)).----...........----.........(((((......)))))................)))))))))).)))))....))). ( -24.00) >DroYak_CAF1 10969 112 - 1 AAC----CCCGUAUCGAAUUGUGGCAGACAAAACGAAGAAAAAAAAAAAGA----UCCCAAGAAUUCCGAAUCACCGGAGGCUAAUUCACAAAUUCCCACAGUUUGCAUACAGAAAUGUG ...----...((((((((((((((...........................----((....)).(((((......)))))................)))))))))).))))......... ( -20.40) >consensus AACA__CACUGUAUCGAAUUGUGGCUGGCAAAAGCAA___AAGAGAAAAGAU_CAUCCCAACAAUUCUGAAUCACCGGAGGCUAAUUCACAAAUUCCCACAGUUUGCAUACAGAAAUGUG ........((((((((((((((((...((....)).............................(((((......)))))................)))))))))).))))))....... (-19.54 = -20.50 + 0.96)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:40:45 2006