Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 8,493,758 – 8,493,872 |
Length | 114 |
Max. P | 0.963544 |
Location | 8,493,758 – 8,493,872 |
---|---|
Length | 114 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 90.91 |
Mean single sequence MFE | -41.88 |
Consensus MFE | -38.46 |
Energy contribution | -39.52 |
Covariance contribution | 1.06 |
Combinations/Pair | 1.03 |
Mean z-score | -2.03 |
Structure conservation index | 0.92 |
SVM decision value | 1.55 |
SVM RNA-class probability | 0.963544 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 8493758 114 + 22407834 GCUGCCUCGAUGCUCGAGAUGGCCAAGAGGCAGAAGAGGAGGAAGGCCAAGGCGAAGCAAGCGCAUCGGUUUGUCAUCUUUGUGCGGCUGUCUCCUGCAAGAA------UUUAAGAAAUA .(((((((...(((......)))...)))))))...((((((..((((...((...))..(((((..(((.....)))..))))))))).)))))).......------........... ( -38.00) >DroSim_CAF1 2980 114 + 1 GCUGCCUCGAUGCUCGAGAUGGCCAAGAGGCAGAAGAGGAGGAAGGCCAAGGCGAAGCAAGCGCAUCGGUUUGUCAUCUUUGUGCGGCUGUCUCCUGCAAGAA------UUUAAGAAAUA .(((((((...(((......)))...)))))))...((((((..((((...((...))..(((((..(((.....)))..))))))))).)))))).......------........... ( -38.00) >DroEre_CAF1 2658 113 + 1 GCUGCCUCGAUGCUCGAGAUGGCCAGGAGGCAGAAGAGCAGGAAGGCCAGGGCGAAGCAAGCGCAUCGGUUGGUCAUCUUUGUGCGGCUGUCUCCUGAAAGAGA-------UCGGAAAUG (((..((((.....))))..)))((((((((((..(.((((((.(((((.(.(((.((....)).))).)))))).)).)))).)..)))))))))).......-------......... ( -45.40) >DroYak_CAF1 3018 120 + 1 GCUGCCUCGAUGCUCGAGAUGGCCAGGAGGCAGAAGAGCAGGAAGGCCAAGGCGAAGCAAGCGCAUCGGUUUGUCAUCUUUGUGCGGCUGUCUCCUGAAAAAGAAGUAGUUUGAGAAGUA (((..((((.....))))..)))((((((((((....(((.(((((.((((.(((.((....)).))).))))...))))).)))..))))))))))....................... ( -46.10) >consensus GCUGCCUCGAUGCUCGAGAUGGCCAAGAGGCAGAAGAGCAGGAAGGCCAAGGCGAAGCAAGCGCAUCGGUUUGUCAUCUUUGUGCGGCUGUCUCCUGAAAGAA______UUUAAGAAAUA (((..((((.....))))..)))((((((((((....(((.(((((.((((.(((.((....)).))).))))...))))).)))..))))))))))....................... (-38.46 = -39.52 + 1.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:40:24 2006