Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 8,483,709 – 8,483,829 |
Length | 120 |
Max. P | 0.805943 |
Location | 8,483,709 – 8,483,807 |
---|---|
Length | 98 |
Sequences | 6 |
Columns | 98 |
Reading direction | reverse |
Mean pairwise identity | 88.64 |
Mean single sequence MFE | -42.33 |
Consensus MFE | -35.35 |
Energy contribution | -35.00 |
Covariance contribution | -0.35 |
Combinations/Pair | 1.33 |
Mean z-score | -2.14 |
Structure conservation index | 0.84 |
SVM decision value | 0.63 |
SVM RNA-class probability | 0.805943 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 8483709 98 - 22407834 GCAUGGGAAUGGGAAUUUUGCCCCAGGAUACUUCCCAUGCCGCUCAUAUGUGGCAGUGUCCCGGUGGACUGACCAUGUCCGCUGCCACUCUGCUGAUG (((((((((((((........))))......)))))))))(((......)))((((.((..((((((((.......))))))))..)).))))..... ( -41.50) >DroSec_CAF1 23861 98 - 1 GCAUGGGAGUGGGAACCUGGCCCCAGGAUAUUUCCCAUGCCGCUCAUGUGUGGCAGUGUCCCGGUGGACUGGCCAUGUCCGCUGCCACUCUGCUGAUG (((((((.(((((((((((....))))....)))))))....)))))))..(((((.((..((((((((.......))))))))..)).))))).... ( -46.00) >DroSim_CAF1 24357 98 - 1 GCAUGGGAGUGGGAACCUGGCCCCAGGAUAUUUCCCAUGCCACUCAUGUGUGGCAGUGUCCCGGUGGACUGGCCAUGUCCACUGCCACUCUGCUGAUG (((((((.(((((((((((....))))....)))))))....)))))))..(((((.((..((((((((.......))))))))..)).))))).... ( -45.30) >DroEre_CAF1 31243 98 - 1 GCAUGGGAGUGGGAACCUUGCCCCAGGAUACUUCCCAUGCCGCCCAUGUGCGGCAGUGUGCCGCUGGACUGGCCAUGUCCGCUGCCACUCUGCUGAUG (((((((.((((((((((......)))....)))))))....))))))).((((((.((((.((.((((.......)))))).).))).))))))... ( -44.40) >DroYak_CAF1 41475 98 - 1 GCAUGGGAGUGGGAACCUUGCCCCAGGAUACUUCCCAUGCCGCUCAUGUGCGGCAGUGUCCCAGUGGACUGGCCAUGUCCGCUGCCACUCUGCUGAUG (((((((((((((........))))......)))))))))(((....)))((((((.((..((((((((.......))))))))..)).))))))... ( -44.40) >DroAna_CAF1 24231 98 - 1 GGAUUGGGAUGAGAACCGUGUCCCAGGAUGUUUCCCAAGCUGCUCAUGUGGGGUAGCGUGCCAGUGGACGGGCCAUGUCCGUUGCCAUUCUGAUGAUG (((((((........))).))))(((((((........(((((((.....))))))).........(((((((...)))))))..)))))))...... ( -32.40) >consensus GCAUGGGAGUGGGAACCUUGCCCCAGGAUACUUCCCAUGCCGCUCAUGUGUGGCAGUGUCCCGGUGGACUGGCCAUGUCCGCUGCCACUCUGCUGAUG (((((((((((((........))))......)))))))))(((......)))((((.((..((((((((.......))))))))..)).))))..... (-35.35 = -35.00 + -0.35)
Location | 8,483,737 – 8,483,829 |
---|---|
Length | 92 |
Sequences | 6 |
Columns | 103 |
Reading direction | reverse |
Mean pairwise identity | 70.82 |
Mean single sequence MFE | -36.67 |
Consensus MFE | -13.55 |
Energy contribution | -14.33 |
Covariance contribution | 0.78 |
Combinations/Pair | 1.30 |
Mean z-score | -1.99 |
Structure conservation index | 0.37 |
SVM decision value | 0.55 |
SVM RNA-class probability | 0.778699 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 8483737 92 - 22407834 GUU---------GCUGUUGUUGUUGACCGGU--GCAUGGGAAUGGGAAUUUUGCCCCAGGAUACUUCCCAUGCCGCUCAUAUGUGGCAGUGUCCCGGUGGACU ...---------.........(((.(((((.--.((((((((((((........))))......))))).((((((......)))))))))..))))).))). ( -38.30) >DroPse_CAF1 27779 101 - 1 GGAGUGGGAAUGGGAGUUGGAGUG--CGAGUGCGAGUGCGAGUGGGAACCAUGGCCGAGGAUGUUUCCCAUGCUGCUCAUGUGGGGUAGCGUGCCAGUCGACG .((.(((.....((...(((..(.--((..(((....)))..)).)..)))...))..(((....)))((((((((((.....))))))))))))).)).... ( -33.60) >DroSec_CAF1 23889 92 - 1 GUU---------GCUGUUGUUGUUGACCGGU--GCAUGGGAGUGGGAACCUGGCCCCAGGAUAUUUCCCAUGCCGCUCAUGUGUGGCAGUGUCCCGGUGGACU ...---------.........(((.(((((.--.(((....(((((((((((....))))....)))))))(((((......))))).)))..))))).))). ( -41.10) >DroSim_CAF1 24385 92 - 1 GUU---------GCUGUUGUUGUUGACCGGU--GCAUGGGAGUGGGAACCUGGCCCCAGGAUAUUUCCCAUGCCACUCAUGUGUGGCAGUGUCCCGGUGGACU ...---------.........(((.(((((.--.(((....(((((((((((....))))....)))))))(((((......))))).)))..))))).))). ( -41.50) >DroAna_CAF1 24259 83 - 1 AGA----------CUG-------GGAGUGG---GGAUUGGGAUGAGAACCGUGUCCCAGGAUGUUUCCCAAGCUGCUCAUGUGGGGUAGCGUGCCAGUGGACG ..(----------(((-------(.(.(((---((((((((((.........))))))).....)))))).(((((((.....))))))).).)))))..... ( -31.90) >DroPer_CAF1 24677 101 - 1 GGAGUGGGAAUGGGAGUUGGAGUG--CGAGUGCGAGUGCGAGUGGGAACCAUGGCCGAGGAUGUUUCCCAUGCUGCUCAUGUGGGGUAGCGUGCCAGUCGACG .((.(((.....((...(((..(.--((..(((....)))..)).)..)))...))..(((....)))((((((((((.....))))))))))))).)).... ( -33.60) >consensus GGA_________GCUGUUGUUGUGGACCGGU__GCAUGGGAGUGGGAACCUUGCCCCAGGAUAUUUCCCAUGCCGCUCAUGUGGGGCAGCGUCCCAGUGGACG .....................((..(((((...........(((((((((........))....)))))))(((.(......).)))......)))))..)). (-13.55 = -14.33 + 0.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:40:22 2006