Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 8,483,091 – 8,483,183 |
Length | 92 |
Max. P | 0.700701 |
Location | 8,483,091 – 8,483,183 |
---|---|
Length | 92 |
Sequences | 6 |
Columns | 94 |
Reading direction | reverse |
Mean pairwise identity | 78.33 |
Mean single sequence MFE | -22.93 |
Consensus MFE | -15.02 |
Energy contribution | -15.77 |
Covariance contribution | 0.75 |
Combinations/Pair | 1.17 |
Mean z-score | -1.42 |
Structure conservation index | 0.65 |
SVM decision value | 0.35 |
SVM RNA-class probability | 0.700701 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 8483091 92 - 22407834 UCAGGCUUUUGAGCCGCUGCUGCAGAUGAACUGCCUCGUUGGAUGAAGAUGCAUCUGAAGA--AAAGCGGAUAAAGUUAUUGUUUUAUUACAUU ...((((((....(((((.((.((((((..((.((.....))....))...)))))).)).--..)))))..))))))................ ( -25.10) >DroSec_CAF1 23237 92 - 1 UCAGGCUUUUGAGCCGCUGUUGCAGAUGAACUGCCUCGUUGGAUGAAGAUGCAUCUGAAGA--AAAGCGGAUAAAGUUAUUGUUUAAUUAUACU ...((((((....(((((....((((((..((.((.....))....))...))))))....--..)))))..))))))................ ( -23.30) >DroSim_CAF1 23739 92 - 1 UCAGGCUUUUGAGCCGCUGCUGCAGAUGAACUGCCUCGUUGGAUGAAGAUGCAUCUGAAGA--AAAGCGGAUAAGGUUAUUGUUUAAUUAUAAU ...((((((....(((((.((.((((((..((.((.....))....))...)))))).)).--..)))))..))))))................ ( -24.80) >DroWil_CAF1 41681 87 - 1 UAAGACUCUUAAGGCGCUGCUGCAGAUGCACUGCCUCAUUGGAUGAUGAAGCAUCUGAAAUUAAAAAAGGGAAAAUU-------UAAGUACAAG .....(((((.(((((.(((.......))).)))))..(..((((......))))..)........)))))......-------.......... ( -19.70) >DroYak_CAF1 40838 82 - 1 UCAGGCUUUUGAGCCGCUGCUGCAGAUGAACUGCCUCGUUGGAUGAAGAUGCAUCUGAAGA--AAGGAGGAUAAAGUUAAUGAU---------- (((((((....))))((....)).....((((.((((.(..((((......))))..)...--...))))....))))..))).---------- ( -20.10) >DroAna_CAF1 23663 87 - 1 UGAGGCUCUUGAGGCGCUGUUGCAGGUGAACUGCCUCAUUGGAUGAAGAUGCAUCUGAAAA----UGCAAGUA--GUUG-CGUUUAAAUAUAAG .........((((((((....)).((....))))))))(..((((......))))..)(((----(((((...--.)))-)))))......... ( -24.60) >consensus UCAGGCUUUUGAGCCGCUGCUGCAGAUGAACUGCCUCGUUGGAUGAAGAUGCAUCUGAAGA__AAAGCGGAUAAAGUUAUUGUUUAAUUAUAAU ...((((....)))).(((((((((.....))))....(..((((......))))..).......)))))........................ (-15.02 = -15.77 + 0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:40:20 2006