Locus 2950

Sequence ID 2L_DroMel_CAF1
Location 8,482,885 – 8,482,991
Length 106
Max. P 0.999765
window4682

overview

Window 2

Location 8,482,885 – 8,482,991
Length 106
Sequences 5
Columns 107
Reading direction forward
Mean pairwise identity 85.38
Mean single sequence MFE -36.60
Consensus MFE -32.54
Energy contribution -32.50
Covariance contribution -0.04
Combinations/Pair 1.24
Mean z-score -3.59
Structure conservation index 0.89
SVM decision value 4.03
SVM RNA-class probability 0.999765
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 8482885 106 + 22407834
AGGCGAACUGAGAUUCCUUGCGAAGUCUUUAUUUCCAAUUAAGUUGAAUGCACUUAGUGGUCCGA-AAGGCGCACGCAGAUCAUCUCAGUUCAUCUGUCCACCGAAG
((..((((((((((...(((((..((((((....(((.((((((.......)))))))))....)-)))))...)))))...))))))))))..))........... ( -35.50)
>DroSec_CAF1 23030 106 + 1
AGGCGAACUGAGAUUCUUUGCGAAGUCUUUAUUACCCAUUA-GUUGAAUGCACUUAGUGGUCAGAAAAGGCGCUCGCAGAUCAUCUCAGUUUAUCUGUCAACGAAGA
((..((((((((((..(((((((.((((((.((..((((((-(.((....)).)))))))..)).))))))..)))))))..))))))))))..))........... ( -39.10)
>DroSim_CAF1 23535 107 + 1
AGGCGAACAGAGAUUCUUUGCGAAGUCUUUAUUACCCAUUAAGUUGAAUGCACUUAGUGGUUAGAAAAGGCGCACGCAGAUCAUCUCAGUUUAUCUGUCAACGAAGA
((..((((.(((((..((((((..((((((.(((.(((((((((.......))))))))).))).))))))...))))))..))))).))))..))........... ( -35.40)
>DroEre_CAF1 30430 106 + 1
AGACGAGCUGAGAUUUUUUGCGAAGUCUUUGUUUCCCAUUAGGUGGCAUGUACUUGGUGGUCAGA-AAGACGCUCGCAGAUCAACUCAAUUCAUUUGCCAGCAAAUC
....(((.((((....(((((((.((((((.(...((((((((((.....))))))))))..).)-)))))..)))))))....)))).)))(((((....))))). ( -34.90)
>DroYak_CAF1 40625 106 + 1
AGGCGAGCUGAGAUUUUUUGCGAAGUCUUUGUUUCCCAUUAUGUUGAAUGCACUUGGUGGUCAGA-AAGGCGCUUGCAGAUUAUCUCAGUUCAUCUGUCAACGAAUC
((..((((((((((..(((((((.((((((.(...(((((((((.....)))..))))))..).)-)))))..)))))))..))))))))))..))........... ( -38.10)
>consensus
AGGCGAACUGAGAUUCUUUGCGAAGUCUUUAUUUCCCAUUAAGUUGAAUGCACUUAGUGGUCAGA_AAGGCGCUCGCAGAUCAUCUCAGUUCAUCUGUCAACGAAGA
(((.((((((((((..((((((..(((((......(((((((((.......)))))))))......)))))...))))))..)))))))))).)))........... (-32.54 = -32.50 +  -0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:40:19 2006