Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 8,478,123 – 8,478,219 |
Length | 96 |
Max. P | 0.598603 |
Location | 8,478,123 – 8,478,219 |
---|---|
Length | 96 |
Sequences | 5 |
Columns | 98 |
Reading direction | forward |
Mean pairwise identity | 86.11 |
Mean single sequence MFE | -23.97 |
Consensus MFE | -17.94 |
Energy contribution | -19.38 |
Covariance contribution | 1.44 |
Combinations/Pair | 1.03 |
Mean z-score | -1.63 |
Structure conservation index | 0.75 |
SVM decision value | 0.13 |
SVM RNA-class probability | 0.598603 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 8478123 96 + 22407834 --GAGUUAACUAAGCAGUGCAUCUCAACACCCAUUGUUCCUUAAGCAGUUUUGACUGCUUGUGUCUGCGAACCGGUUAUAAAGUAAUCGAUAACACAU --..((((.....((((.((((...((((.....))))....(((((((....)))))))))))))))....(((((((...))))))).)))).... ( -22.60) >DroSec_CAF1 18483 96 + 1 --GUGUUAAGCAAGCAGUGCCUCUCGACACACAUUGUUCCUUAAGCAGUUUUGACUGCUUGUGUCUGCGAAGCGGUUAUAAAGUAAUCGAUAACACAU --((((((.(((..(((((........)))...........((((((((....))))))))))..)))....(((((((...))))))).)))))).. ( -27.70) >DroSim_CAF1 18547 96 + 1 --GUGUUAAACAAGCAGUGCCUCUCGACACCCAUUGUUACUUAAGCAGUUUUGACUGCUUGUGUCUGCGAAGCGGUUAUAAAGUAAUCGAUAACACAU --((((((.....((((........((((.....))))((.((((((((....)))))))).))))))....(((((((...))))))).)))))).. ( -26.30) >DroEre_CAF1 25403 92 + 1 --GUGUUAAAUAAGCAGUCCA-AUCGACACCCAUU-UUCUUUAAGCAGUU-UCACUGCUUGCGUCCGCGAAGCGGUUAUAGAGUUAUCGAUAAA-AAU --.((((.....)))).....-(((((........-.....(((((((..-...)))))))...((((...))))...........)))))...-... ( -17.30) >DroYak_CAF1 35646 95 + 1 UGGUGUUACAUAAGCAGUUCA-ACCGACACACAUU-UUCCUUAAGCAGUU-GGACUGCUUGCCUCUGCGAAGCGGUUAUAAAGUAAUCGAUAACACAU ..((((((..(((((((((((-((.(.........-.........).)))-))))))))))...........(((((((...))))))).)))))).. ( -25.97) >consensus __GUGUUAAAUAAGCAGUGCAUCUCGACACCCAUUGUUCCUUAAGCAGUUUUGACUGCUUGUGUCUGCGAAGCGGUUAUAAAGUAAUCGAUAACACAU ..((((((.....((((........((((.....))))...((((((((....))))))))...))))....(((((((...))))))).)))))).. (-17.94 = -19.38 + 1.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:40:18 2006