Locus 2948

Sequence ID 2L_DroMel_CAF1
Location 8,473,367 – 8,473,474
Length 107
Max. P 0.870783
window4680

overview

Window 0

Location 8,473,367 – 8,473,474
Length 107
Sequences 6
Columns 114
Reading direction forward
Mean pairwise identity 73.28
Mean single sequence MFE -35.39
Consensus MFE -11.94
Energy contribution -12.88
Covariance contribution 0.94
Combinations/Pair 1.19
Mean z-score -2.34
Structure conservation index 0.34
SVM decision value 0.87
SVM RNA-class probability 0.870783
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 8473367 107 + 22407834
CGUGCACUGCGAGAAAUCGCGUACUAGUCGAAUAUUCAGCCAAGGGUAGGCAGCA-----AAAUUGGC-UGGCUACAAGAUUUCUUAAAGUGUGUCC-AAGUUCGAGGACAGCA
.(((((((..((((((((..(((((((((((.......(((.......)))....-----...)))))-))).)))..))))))))..)))))((((-........)))).)). ( -36.54)
>DroSec_CAF1 13878 107 + 1
CGUGCACUGCAAGAAAUCGCGAACUAGUUGAAUAUUCAGCCAUGGGAAGCCGGCC-----GAAUUGGG-UGGCUACAAGAUUUCUUGAAGUGUGUCC-AAGUUCGAGGACAGCA
.(((((((.(((((((((.....((((((((....)))))..)))(.(((((.((-----.....)).-))))).)..))))))))).)))))((((-........)))).)). ( -38.70)
>DroSim_CAF1 13908 107 + 1
CGUGCACUGCAAGAAAUCGCGAACUAGUUGAAUAUUCAGCCAUGGGAAGCCGGCA-----AAAUUGGG-UGACUACAAGAUUUCUUCAAGUGUGUCC-AAGUUCGAGGACAGCA
.(((((((..((((((((((......(((((....)))))..(((....))))).-----....(((.-...)))...))))))))..)))))((((-........)))).)). ( -32.00)
>DroEre_CAF1 14447 107 + 1
CAUGCACUGCGAGAAAUCGCGUAUCAGUCGCAUAUCCGGCCAUGCGCAGCCAGCC-----CAAUUGGC-UGGCCAACAGAUUUCUGGAAGUGUGUCC-AAGUUCGAGGACAGCA
...(((((.(.(((((((((((((..((((......)))).)))))).(((((((-----.....)))-)))).....))))))).).)))))((((-........)))).... ( -46.70)
>DroYak_CAF1 31338 93 + 1
CGUGCACUGCGAGAAAUCGCGGUUCAGUCGAAUA--------------GCUAGCA-----UAAUUGAG-UGGCUAAAAAAUUUCUUAAAGUGUGGUG-AAGUUCGAGGACAGCA
..((((((((((....)))))))...(((...((--------------((((.((-----....))..-))))))...((((((............)-)))))....))).))) ( -25.30)
>DroPer_CAF1 15164 108 + 1
CGUGCACUGAGAGAAACGGCAAAGCAAUU------CGGGCCACAACAAGGUAUCUCUCGUUAAUUGGAUUGGGGGUAAGCAUUCUUGGAGUGUGGCCUGGGUUCGAGGACAGCA
.((.(.(((.......)))....(.((((------(((((((((.((((((((((((.(((.....))).))))))).....)))))...))))))))))))))..).)).... ( -33.10)
>consensus
CGUGCACUGCGAGAAAUCGCGAACCAGUCGAAUAUUCAGCCAUGGGAAGCCAGCA_____AAAUUGGG_UGGCUACAAGAUUUCUUGAAGUGUGUCC_AAGUUCGAGGACAGCA
...(((((..((((((((......(((((.........................................)))))...))))))))..))))).......(((....))).... (-11.94 = -12.88 +   0.94)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:40:17 2006