Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 8,467,933 – 8,468,025 |
Length | 92 |
Max. P | 0.664339 |
Location | 8,467,933 – 8,468,025 |
---|---|
Length | 92 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 76.79 |
Mean single sequence MFE | -31.12 |
Consensus MFE | -20.23 |
Energy contribution | -20.37 |
Covariance contribution | 0.14 |
Combinations/Pair | 1.23 |
Mean z-score | -1.31 |
Structure conservation index | 0.65 |
SVM decision value | 0.28 |
SVM RNA-class probability | 0.664339 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 8467933 92 + 22407834 ----------------GUGGAACCACCUGUGGUGCGAAAGUGCCUCGAUUGUGGACCCGCGAACA------------AUUUUAUUUCUGCGGAUGCAAAGGGUUAAGUCUUACCCAUUCC ----------------..((((((((.((.((..(....)..)).))...))))..(((((((..------------.......))).)))).......((((........)))).)))) ( -29.30) >DroSec_CAF1 8601 91 + 1 ----------------GUGGAACCACCUGUGGUGCGAAAGUGCCUCGAUUGUGGACCCGCGAACA------------AUUUUAUUUCUGCGGAUGCAAAGGGUUAAGUCUUACCCAUUC- ----------------((((..((((.((.((..(....)..)).))...))))..)))).....------------..........(((....)))..((((........))))....- ( -28.70) >DroSim_CAF1 8650 91 + 1 ----------------GUGGAACCACCUGUGGUGCGAAAGUGCCUCGAUUGUGGACCCGCGAACA------------AUUUUAUUUCUGCGGAUGCAAAGGGUUAAGUCUUACCCAUUC- ----------------((((..((((.((.((..(....)..)).))...))))..)))).....------------..........(((....)))..((((........))))....- ( -28.70) >DroEre_CAF1 8975 103 + 1 ----------------GUGGAACCACCUGUGGUGCGAAAGUGCCGCGAUUGUGGACUUGCGAACAUUUGCGAGAGCAAUUUUACUUCUGCGGAUGCAAAGGUUGAAGUCUUACUCAUUC- ----------------(..(((((((.(((((..(....)..)))))...)))).(((((((....)))))))...........)))..)(((((..((((......))))...)))))- ( -33.80) >DroYak_CAF1 25787 119 + 1 UUCCGACUCCGAUUCCAUGGAACCACCUGUGGUGCGAAAGUGCCGCGAUUGUGGACCCGCGAACAUUUGCGAGAAUGGUUUUAUUUCUGCGGAUGCAAAGGGUUAAGUCUUAGCCACUC- ....(((((((......)))).((((.(((((..(....)..)))))...))))((((.....((((((((..((((....))))..))))))))....))))...)))..........- ( -39.10) >DroAna_CAF1 8719 103 + 1 ----------------GGGGAGCCACCUGUGGUGCGAAAGUACGAGCUCAGAGGCUUCGCGAACAGUUGCGAAAACAAUUUAAUUUCAGCGAAUAUGAAGGGUUAACUUUUACUCAUUC- ----------------(.((((((..((((.((((....)))).)...))).)))))).)...((.((((((((.........)))).))))...))..((((........))))....- ( -27.10) >consensus ________________GUGGAACCACCUGUGGUGCGAAAGUGCCUCGAUUGUGGACCCGCGAACA____________AUUUUAUUUCUGCGGAUGCAAAGGGUUAAGUCUUACCCAUUC_ ......................((((.((.(((((....))))).))...))))..(((((((.....................))).)))).......((((........))))..... (-20.23 = -20.37 + 0.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:40:13 2006