Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 8,463,339 – 8,463,430 |
Length | 91 |
Max. P | 0.723726 |
Location | 8,463,339 – 8,463,430 |
---|---|
Length | 91 |
Sequences | 4 |
Columns | 91 |
Reading direction | forward |
Mean pairwise identity | 73.99 |
Mean single sequence MFE | -13.90 |
Consensus MFE | -11.18 |
Energy contribution | -10.93 |
Covariance contribution | -0.25 |
Combinations/Pair | 1.11 |
Mean z-score | -1.19 |
Structure conservation index | 0.80 |
SVM decision value | 0.41 |
SVM RNA-class probability | 0.723726 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 8463339 91 + 22407834 CAUUUUAUGCAUAUAAUCUAAAUAAUAAAAUUGAACCUGAUUACACAUCAAAAUCAAAUUUCUCUCCGUGCAUCGGGGGAGAGAACAAUAA ..............................((((...((((.....))))...)))).(((((((((........)))))))))....... ( -15.00) >DroSim_CAF1 4075 90 + 1 -UUUAUAUGCAUAUAAUCCAAAUAAUAACAUUGAACCUGAUUACAUAUCAAAAUCAAAUUUCUCUCCGUGCAUCGGGGGAGAGAACAAUAA -.............................((((...((((.....))))...)))).(((((((((........)))))))))....... ( -15.70) >DroEre_CAF1 4200 86 + 1 CAUUUCAAUUAUAUAAUCAAAAUAAAAGCAUUGAAAGUGAUGACGU-UCAAAA----UUUUCUCUCUGUGCAAUGGGGGAGAGAACAAUAA ..............................(((((.((....)).)-))))..----((((((((((........))))))))))...... ( -13.50) >DroYak_CAF1 4195 76 + 1 CUUUAUUGUCAUAUAAUCAAAAUAAAAACAU-----------ACGG-CCAUUA---UUUUUCUCUCUGUGCAAUGGGGGAGAGACCAAUAA ..((((((((........(((((((...(..-----------..).-...)))---))))(((((((........))))))))).)))))) ( -11.40) >consensus CAUUAUAUGCAUAUAAUCAAAAUAAAAACAUUGAACCUGAUUACAU_UCAAAA___AAUUUCUCUCCGUGCAACGGGGGAGAGAACAAUAA ..........................................................(((((((((........)))))))))....... (-11.18 = -10.93 + -0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:40:12 2006