Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 8,445,683 – 8,445,799 |
Length | 116 |
Max. P | 0.999218 |
Location | 8,445,683 – 8,445,799 |
---|---|
Length | 116 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 81.11 |
Mean single sequence MFE | -32.42 |
Consensus MFE | -24.39 |
Energy contribution | -25.55 |
Covariance contribution | 1.16 |
Combinations/Pair | 1.07 |
Mean z-score | -3.74 |
Structure conservation index | 0.75 |
SVM decision value | 3.44 |
SVM RNA-class probability | 0.999218 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 8445683 116 + 22407834 UUGGGCAAGUCUU--UUUUCGUGGUGGUACAGAAAUCUCCUUCCAUCAAAUUCUAACCAAAAG-UUUU-UAUGAAUUUUGUAGAAAGCGAUUUUUCUACCACCAAUGAAAAUGGAAAUUU .........(((.--((((((((((((((.(((((((.(.(((.((.((((((.(((.....)-))..-...)))))).)).))).).))))))).))))))).))))))).)))..... ( -31.60) >DroSec_CAF1 5356 118 + 1 UUGGGAAAGUCUUAUUUUUGGUGGUGGUACAGAAAUCUCCUUCCAUCAAAUUCUAACAAAAAG-UUUG-UAUGAAUUUGGUAGAAAGCGAUUUUUAUACCACCAAUGAAAAUUGAAAAUU .........((..((((((..((((((((.(((((((.(.(((.(((((((((..((((....-.)))-)..))))))))).))).).))))))).))))))))..)))))).))..... ( -36.20) >DroSim_CAF1 4911 118 + 1 UUGGGCAAGUCUUAUUUUUGGUGGUGGUACAGAAAUCUCCUUCCAUCAAAUUCUAACCACAAG-UUUG-UAUGAAUUUGGUAGAAAGCGAUUUUUAUACCACCAAUGAAAAUUGAAAAUU .........((..((((((..((((((((.(((((((.(.(((.(((((((((.....(((..-..))-)..))))))))).))).).))))))).))))))))..)))))).))..... ( -33.80) >DroEre_CAF1 5006 114 + 1 GUGGCAAAAUCCUACU--UCAUGGUGGUACAGAAAUCUCCUUCCACCAAAUUCUAACCGAAAG-CGUG-UAUGA--UUGUUAGAAAGAGAUUUUUCUACUACCAAUGAUUGUUAUAAUGU (((((((.........--(((((((((((.(((((((((.(((...(((......(((....)-.)).-.....--)))...))).))))))))).))))))).)))))))))))..... ( -30.30) >DroYak_CAF1 4765 118 + 1 GUGGGAAAAUCUAAUU--UUGUGGUUGUACAGUAAUCUCCUUCCACCAAAAUCGAACAGAAUAUUAUGUUAUGAAUUUGGUAGAAAGAGAUUUUUCUACUACCAAGGAUUGUUACAAUAA ((((...(((((....--...((((.(((.((.((((((.(((.((((((.(((((((........)))).))).)))))).))).)))))).)).))).)))).))))).))))..... ( -30.20) >consensus UUGGGAAAGUCUUAUUUUUCGUGGUGGUACAGAAAUCUCCUUCCAUCAAAUUCUAACCAAAAG_UUUG_UAUGAAUUUGGUAGAAAGCGAUUUUUCUACCACCAAUGAAAAUUGAAAUUU .....................((((((((.(((((((.(.(((.(((((((((...................))))))))).))).).))))))).))))))))................ (-24.39 = -25.55 + 1.16)
Location | 8,445,683 – 8,445,799 |
---|---|
Length | 116 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 81.11 |
Mean single sequence MFE | -33.86 |
Consensus MFE | -25.13 |
Energy contribution | -26.53 |
Covariance contribution | 1.40 |
Combinations/Pair | 1.00 |
Mean z-score | -5.02 |
Structure conservation index | 0.74 |
SVM decision value | 3.37 |
SVM RNA-class probability | 0.999101 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 8445683 116 - 22407834 AAAUUUCCAUUUUCAUUGGUGGUAGAAAAAUCGCUUUCUACAAAAUUCAUA-AAAA-CUUUUGGUUAGAAUUUGAUGGAAGGAGAUUUCUGUACCACCACGAAAA--AAGACUUGCCCAA .....((..(((((..((((((((.(.(((((.(((((((..((((((.((-(...-(....).)))))))))..))))))).))))).).)))))))).)))))--..))......... ( -32.90) >DroSec_CAF1 5356 118 - 1 AAUUUUCAAUUUUCAUUGGUGGUAUAAAAAUCGCUUUCUACCAAAUUCAUA-CAAA-CUUUUUGUUAGAAUUUGAUGGAAGGAGAUUUCUGUACCACCACCAAAAAUAAGACUUUCCCAA ........(((((...((((((((((.(((((.(((((((.(((((((..(-(((.-....))))..))))))).))))))).))))).))))))))))...)))))............. ( -37.50) >DroSim_CAF1 4911 118 - 1 AAUUUUCAAUUUUCAUUGGUGGUAUAAAAAUCGCUUUCUACCAAAUUCAUA-CAAA-CUUGUGGUUAGAAUUUGAUGGAAGGAGAUUUCUGUACCACCACCAAAAAUAAGACUUGCCCAA ........(((((...((((((((((.(((((.(((((((.(((((((.((-((..-..))))....))))))).))))))).))))).))))))))))...)))))............. ( -36.90) >DroEre_CAF1 5006 114 - 1 ACAUUAUAACAAUCAUUGGUAGUAGAAAAAUCUCUUUCUAACAA--UCAUA-CACG-CUUUCGGUUAGAAUUUGGUGGAAGGAGAUUUCUGUACCACCAUGA--AGUAGGAUUUUGCCAC ............((((.(((.(((.(.(((((((((((((.(((--...((-..((-....))..))....))).))))))))))))).).))).)))))))--....((......)).. ( -28.50) >DroYak_CAF1 4765 118 - 1 UUAUUGUAACAAUCCUUGGUAGUAGAAAAAUCUCUUUCUACCAAAUUCAUAACAUAAUAUUCUGUUCGAUUUUGGUGGAAGGAGAUUACUGUACAACCACAA--AAUUAGAUUUUCCCAC ................((((.(((.(..(((((((((((((((((.((..((((........)))).)).)))))))))))))))))..).))).))))...--................ ( -33.50) >consensus AAAUUUCAAUUUUCAUUGGUGGUAGAAAAAUCGCUUUCUACCAAAUUCAUA_CAAA_CUUUUGGUUAGAAUUUGAUGGAAGGAGAUUUCUGUACCACCACCAAAAAUAAGACUUUCCCAA ................((((((((.(.(((((.(((((((.(((((((...................))))))).))))))).))))).).))))))))..................... (-25.13 = -26.53 + 1.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:40:11 2006