Locus 2943

Sequence ID 2L_DroMel_CAF1
Location 8,445,546 – 8,445,646
Length 100
Max. P 0.658327
window4671

overview

Window 1

Location 8,445,546 – 8,445,646
Length 100
Sequences 5
Columns 100
Reading direction reverse
Mean pairwise identity 81.70
Mean single sequence MFE -30.08
Consensus MFE -19.00
Energy contribution -21.24
Covariance contribution 2.24
Combinations/Pair 1.21
Mean z-score -1.85
Structure conservation index 0.63
SVM decision value 0.26
SVM RNA-class probability 0.658327
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 8445546 100 - 22407834
CAUUUUGACAGAUGUGUUCUGCUGAAGUAUCGUCGGAUCCUUCGGAGCACUUAUGUGUCCAGAUCAAGCCGCACCUGCUACACUGUCGGCAACAAAAUGA
(((((((((((.(((((..(((.((((.(((....))).))))(((.(((....))))))..........)))...)).))))))))(....))))))). ( -29.90)
>DroSec_CAF1 5219 100 - 1
CAUUUUGACAGAUGUGCGCUUCUGAAGUAUCGUUGGAUUCUUCGGAACAUUUCUCUGACCAGAUCAAGCCGCACCUGCUGCACUGUCGGCAACAAAAUGA
(((((((......((((((((((((((.(((....))).))))))).......(((....)))...)).))))).(((((......))))).))))))). ( -29.00)
>DroSim_CAF1 4774 100 - 1
CAUUUUGACAGAUGUGUUCUUCUGAAGUAUCGUUGGAUUCUUCGGAACAUUUCUCUGACCAGAUCAAGCCGCACCUGCUGCACUGUCGGCAACAAAAUGA
(((((((.((((.(((((((...((((.(((....))).)))))))))))...)))).((.(((...((.((....)).))...)))))...))))))). ( -28.60)
>DroEre_CAF1 4879 94 - 1
CGUUUUGACAGAUAUGUCCUGCCAAGCUAUCGUUGGAGCCUUCGGAGCACUUCUGUGUCCAGGACACGCCGCACCUGCUGCAC------UGGCACAACGA
((((.((.(((...((((((.((((.......)))).......(((.(((....)))))))))))).((.((....)).)).)------)).)).)))). ( -29.40)
>DroYak_CAF1 4628 100 - 1
CACUUUGGCAGAUGUGUUCUGCUGACUUAUCGUCGGAACCUUCGGAGCACUUCUGUGUCCAGAUCAAGCCGCACCUGCUGCAUAUCCGACAACACAAAGA
..((((((((((.....))))).........((((((......(((.(((....)))))).......((.((....)).))...))))))....))))). ( -33.50)
>consensus
CAUUUUGACAGAUGUGUUCUGCUGAAGUAUCGUUGGAUCCUUCGGAGCACUUCUGUGUCCAGAUCAAGCCGCACCUGCUGCACUGUCGGCAACAAAAUGA
((((((((((((.((((....((((((.(((....))).)))))).)))).)))))...........((.((....)).))...........))))))). (-19.00 = -21.24 +   2.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:40:09 2006