Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 8,444,909 – 8,445,064 |
Length | 155 |
Max. P | 0.914732 |
Location | 8,444,909 – 8,445,028 |
---|---|
Length | 119 |
Sequences | 6 |
Columns | 119 |
Reading direction | reverse |
Mean pairwise identity | 79.44 |
Mean single sequence MFE | -27.35 |
Consensus MFE | -15.75 |
Energy contribution | -15.12 |
Covariance contribution | -0.63 |
Combinations/Pair | 1.61 |
Mean z-score | -2.05 |
Structure conservation index | 0.58 |
SVM decision value | 0.61 |
SVM RNA-class probability | 0.799754 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 8444909 119 - 22407834 GCUGAGGAUCAGAUUUAUAUUUCUUAUAGAUUUCCAUUUCUUCCGCACCCAUGGGUACCUGUCUACCCAUGAUCAUGCGUUCCAUUUCCUCCACAUCCUUGUCAAAGGCCCUUGACCUC ...(((((..(((((((((.....)))))))))..........((((..((((((((......))))))))....)))).......))))).........(((((......)))))... ( -29.50) >DroSec_CAF1 4576 119 - 1 GCUGAGGAUCAGAUUUAUAUUUCUUAUAUAUUUCCAUUUCUUCCGCACUCAUGGGUACCUGUCUACCCAUGAUCAUGCGCUCCAUUUCCUCCACAUUCUUGUCAAAGGCCCUUGACCUC ...(((((...((..(((((.....)))))..)).........((((.(((((((((......)))))))))...)))).......))))).........(((((......)))))... ( -30.10) >DroSim_CAF1 4131 119 - 1 GCUGAGGAUCAGAUUUAUAUUUCUUAUAGAUUUCCAUUUCUUCCGCACUCAUGGGUACCUGUCUACCCAUGAUCAUGCGCUCCAUUUCCUCCACAUUCUUGUCAAAGGCCCUUGACCUC ...(((((..(((((((((.....)))))))))..........((((.(((((((((......)))))))))...)))).......))))).........(((((......)))))... ( -31.30) >DroEre_CAF1 4236 119 - 1 GCUGAGGGUCGCAUGUAUACUUCCUAAAGAUUUCAACUUCUUCCUCGCUUAUGGGUACCUGUCUAUUCAUGAUCAUGAGCUCCAUUUGCCCCACAUCCUUGUCGAAAGCCCUAGACCUC .....(((((................((((........))))....((((..(((((..((....(((((....)))))...))..))))).(((....)))...))))....))))). ( -20.30) >DroYak_CAF1 3985 119 - 1 GCUGAGGGUCAGAUUUAUAUUUCUUGAAGAUUUCCACUUCCUCCGCACUUGUGGGUACCUGUCUACCCAUGAUCAUGUGCUCCAUUUGCUCCACAUCUUUGUCAAAAGCACCAGACCUC .....(((((...............((((.......))))....(((((..((((((......))))))..)....))))......((((..(((....)))....))))...))))). ( -26.00) >DroAna_CAF1 3486 119 - 1 GGGUGGGAUCUGAAUCGUAUUUCUUAAAAAGCUGGAUCUCUUCAUCACUUUCGGGCACCUGCCUGCUCAUGAUCAUCUGGCCCAUGCUCUCCAGUUGUUUGUCCGAGAUACUCGAGUUU .....(((..(((...(((((((.((((.(((((((.......((((....(((((....)))))....)))).....(((....))).))))))).))))...))))))))))..))) ( -26.90) >consensus GCUGAGGAUCAGAUUUAUAUUUCUUAAAGAUUUCCAUUUCUUCCGCACUCAUGGGUACCUGUCUACCCAUGAUCAUGCGCUCCAUUUCCUCCACAUCCUUGUCAAAGGCCCUUGACCUC ...((((.((.................................((((.(((((((((......)))))))))...)))).................((((....)))).....)))))) (-15.75 = -15.12 + -0.63)
Location | 8,444,948 – 8,445,064 |
---|---|
Length | 116 |
Sequences | 6 |
Columns | 116 |
Reading direction | reverse |
Mean pairwise identity | 77.13 |
Mean single sequence MFE | -31.36 |
Consensus MFE | -21.98 |
Energy contribution | -20.10 |
Covariance contribution | -1.88 |
Combinations/Pair | 1.68 |
Mean z-score | -1.64 |
Structure conservation index | 0.70 |
SVM decision value | 1.10 |
SVM RNA-class probability | 0.914732 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 8444948 116 - 22407834 UGGGUUUGCCGGACGUUAGUAUCAGUAUGUUGUAGUGCUGAGGAUCAGAUUUAUAUUUCUUAUAGAUUUCCAUUUCUUCCGCACCCAUGGGUACCUGUCUACCCAUGAUCAUGCGU .((((..((.(((........(((((((......)))))))(((...((((((((.....)))))))))))......)))))))))(((((((......))))))).......... ( -33.50) >DroSec_CAF1 4615 116 - 1 UGGGUUUACCCGACGUUAGUAUCAGUAUGUUGUAGUGCUGAGGAUCAGAUUUAUAUUUCUUAUAUAUUUCCAUUUCUUCCGCACUCAUGGGUACCUGUCUACCCAUGAUCAUGCGC .(((....))).............(((((.....((((.(((((...((..(((((.....)))))..))....))))).))))(((((((((......))))))))).))))).. ( -37.40) >DroSim_CAF1 4170 116 - 1 UGGGUUUGCCGGACGUUAGUAUCAGUAUGUUGUAGUGCUGAGGAUCAGAUUUAUAUUUCUUAUAGAUUUCCAUUUCUUCCGCACUCAUGGGUACCUGUCUACCCAUGAUCAUGCGC ..((....))(((........(((((((......)))))))(((...((((((((.....)))))))))))......)))(((.(((((((((......)))))))))...))).. ( -35.30) >DroEre_CAF1 4275 116 - 1 UGGGUUUGCCGAACGUUAGUAUCAGUACGUUGUAGUGCUGAGGGUCGCAUGUAUACUUCCUAAAGAUUUCAACUUCUUCCUCGCUUAUGGGUACCUGUCUAUUCAUGAUCAUGAGC ..((....))((.(((.(((((((((((......)))))))(((((.((((...........((((........)))).......)))).).))))...)))).))).))...... ( -22.27) >DroWil_CAF1 5997 113 - 1 UUGGUUCUAUG---GCCAUGAUCAGUAUAUUAUAAUGCUGAGGAUCAAGUGCGUAUUCAUUAAGCAAAUCACGAUCCUCCUGUCUGUUGGGCCAUUCCCUGUUCAUUAUCAACUUG ..((....(((---(((....(((((((......)))))))(((((...(((.((.....)).)))......)))))............)))))).)).................. ( -27.00) >DroYak_CAF1 4024 116 - 1 UGGGUUUGCCGACAUUAAGUAUCAGCACGUUGUAGUGCUGAGGGUCAGAUUUAUAUUUCUUGAAGAUUUCCACUUCCUCCGCACUUGUGGGUACCUGUCUACCCAUGAUCAUGUGC ((((((((((.((.....)).(((((((......))))))).)).))))))))........((((.......))))....(((((..((((((......))))))..)....)))) ( -32.70) >consensus UGGGUUUGCCGGACGUUAGUAUCAGUAUGUUGUAGUGCUGAGGAUCAGAUUUAUAUUUCUUAAAGAUUUCCAUUUCUUCCGCACUCAUGGGUACCUGUCUACCCAUGAUCAUGCGC ..((....))...........(((((((......)))))))......................................((((.(((((((((......)))))))))...)))). (-21.98 = -20.10 + -1.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:40:08 2006