Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 8,443,706 – 8,443,796 |
Length | 90 |
Max. P | 0.944318 |
Location | 8,443,706 – 8,443,796 |
---|---|
Length | 90 |
Sequences | 3 |
Columns | 90 |
Reading direction | reverse |
Mean pairwise identity | 91.85 |
Mean single sequence MFE | -22.30 |
Consensus MFE | -19.61 |
Energy contribution | -21.07 |
Covariance contribution | 1.45 |
Combinations/Pair | 1.13 |
Mean z-score | -2.81 |
Structure conservation index | 0.88 |
SVM decision value | 1.34 |
SVM RNA-class probability | 0.944318 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 8443706 90 - 22407834 CGCAUUUUCAUAGUUGGAAAUGUAUCAUUUUCCAAGGAUCCGUCUUCAGUCGCUGCAUUGUUUUUUCGAACUCUUUUUCGUCGCAUUUUU .(((.........(((((((........))))))).....((.(....).)).)))..(((.....((((......))))..)))..... ( -11.20) >DroSec_CAF1 3124 90 - 1 CGCAUUUUCAUAGUUGGAAAUGUAUCUUUUUCCAAGGAUACGCCUUCAAUCGCUGAAGAGUUUUUUCGGACUCUUCUGUGUCGCAUUUUU .((.........((((((..(((((((((....)))))))))..))))))(((.((((((((......)))))))).)))..))...... ( -26.80) >DroSim_CAF1 2676 90 - 1 CGCAUUUUCAUAGUUGGAAAUGUAUCUUUUUCCAAGGAUACGUCUUCAAUCGCUGAAGAGUUUUUUCGGACUCUUCUGUGUCGCAUUUUU .((.........((((((.((((((((((....)))))))))).))))))(((.((((((((......)))))))).)))..))...... ( -28.90) >consensus CGCAUUUUCAUAGUUGGAAAUGUAUCUUUUUCCAAGGAUACGUCUUCAAUCGCUGAAGAGUUUUUUCGGACUCUUCUGUGUCGCAUUUUU .((.........((((((.((((((((((....)))))))))).))))))(((.(((((((((....))))))))).)))..))...... (-19.61 = -21.07 + 1.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:40:04 2006