Locus 2939

Sequence ID 2L_DroMel_CAF1
Location 8,435,258 – 8,435,378
Length 120
Max. P 0.582556
window4665

overview

Window 5

Location 8,435,258 – 8,435,378
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 76.67
Mean single sequence MFE -38.35
Consensus MFE -20.58
Energy contribution -22.42
Covariance contribution 1.84
Combinations/Pair 1.23
Mean z-score -1.68
Structure conservation index 0.54
SVM decision value 0.10
SVM RNA-class probability 0.582556
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 8435258 120 - 22407834
AAGCAGGCUGCAAAGCAACAAUCCCUGCUGAAACCACAAUUGAGUCUUCUUAAGCCACCGUCAGAAACGCGAUGGCAUAUGCUGCAGUGCAUGCAGCACGAUCAUGGGUACGCCAACAUG
.....((((((..((((........))))....(((..((((...........((((.(((.......))).))))...(((((((.....)))))))))))..)))))).)))...... ( -36.10)
>DroEre_CAF1 8220 120 - 1
AAGCAGGCUGCGAAGCAGCAAUCUUUGCUGAAACCACAAUUGAGUCUUCUUAAGCCACCGUCAGAAACGCGAUGGCAUGUGCUGCAAUGCAUGCAGCACGAUCAUGGGUACGCCAACAUG
.....((((((....(((((.....)))))...(((...(((((....)))))((((.(((.......))).)))).(((((((((.....)))))))))....)))))).)))...... ( -40.30)
>DroWil_CAF1 9568 117 - 1
AAGCAGGCUGUAAAACAGCAGUCGCUACUGAAGCCUCAAUUAAGUCUGUUGAAGCCAACUGCU---CGACGGUGGCAUUUGAUGCUGUGCAUCCAACACGAUCAUGGUUAUGCCAAUAUG
.(((.((((((......)))))))))...................(((((((.((.....)))---))))))((((((.....((((((.(((......))))))))).))))))..... ( -32.70)
>DroYak_CAF1 8322 120 - 1
AAGCAGGCUGCGAAGCAACAAUCCCUGCUGAAACCACAACUGAGUCUACUUAAGCCACCGUCAGAAACGCGUUGGCAUAUGCUGCAGUGCAUGCAGCACGAUCAUGGGUAUGCCAACAUG
..((.((((....((((........))))...........((((....))))))))...((.....))))((((((((((.(((..((((.....))))...)).).))))))))))... ( -35.80)
>DroAna_CAF1 8669 120 - 1
AAGAAGGCAGUUAAGCAGCAGUCCUUGCUUAAGCCACAGCUGAGUCUACUGAAGCCCCCAACGAUAAGCAGGUGGCACAUGCUGCAGUGUAUCCAGCAUGACCAUGGGUACGCGAAUAUG
......((((((((((((......))))))).(((((.(((..(((...((.......))..))).)))..)))))....))))).(((((((((.........)))))))))....... ( -37.80)
>DroPer_CAF1 8039 120 - 1
AAACAAGCGACACAGCAGCGAUCGCUGCUGAAGCCGCAAGUGAGUCUGCUGAAGGCGCCGGCAGUGAAUCGCCGCCAUCAGCUGGUGUGCAUCCAGCACGAUCAUGGCUAUGCAGACAUG
......(((.(.(((((((....)))))))..).)))......((((((.((.((((.(((.......))).)))).))(((((.(((((.....)))))....)))))..))))))... ( -47.40)
>consensus
AAGCAGGCUGCAAAGCAGCAAUCCCUGCUGAAACCACAAUUGAGUCUACUGAAGCCACCGUCAGAAACGCGAUGGCAUAUGCUGCAGUGCAUCCAGCACGAUCAUGGGUACGCCAACAUG
.....(((.....(((((......)))))...(((.((..((.(((.......((((.(((.......))).))))....((((((.....))))))..))))))))))..)))...... (-20.58 = -22.42 +   1.84)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:40:03 2006