Locus 2936

Sequence ID 2L_DroMel_CAF1
Location 8,426,673 – 8,426,763
Length 90
Max. P 0.571470
window4658

overview

Window 8

Location 8,426,673 – 8,426,763
Length 90
Sequences 5
Columns 94
Reading direction reverse
Mean pairwise identity 93.60
Mean single sequence MFE -18.34
Consensus MFE -15.36
Energy contribution -15.52
Covariance contribution 0.16
Combinations/Pair 1.14
Mean z-score -1.31
Structure conservation index 0.84
SVM decision value 0.08
SVM RNA-class probability 0.571470
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 8426673 90 - 22407834
UGCGAUUGACAUUUUCACAGACACGCACUCUAGAUCUUUCAAUGCAAUUCGAUGACCUCAUUAAGGAUUGCCGAUUGCAUCCACCACUU----A
((((((((........................((....))...(((((((((((....))))..)))))))))))))))..........----. ( -17.50)
>DroSec_CAF1 24697 92 - 1
UGCGAUUGACAUUUUCACAGAGACGCACUCUAGAUCUUUCAAUGCAAUUCGAUGACCUCAUUAAGGAUUGCCGAUUACAUCCACCACUUA--UA
((..((((..........((((.....))))............(((((((((((....))))..)))))))))))..))...........--.. ( -15.10)
>DroSim_CAF1 24544 94 - 1
UGCGAUUGACAUUUUCACAGAGACGCACUCUAGAUCUUUCAAUGCAAUUCGAUGACCUCAUUAAGGAUUGCCGAUUGCAUCCACCACUUACUUA
((((((((..........((((.....))))............(((((((((((....))))..)))))))))))))))............... ( -20.30)
>DroEre_CAF1 25017 90 - 1
UGUGAUUGACAUUUUCACUGAGACGCACUCUAGAUCGUUCAAUGCAAUUCGAUGACCUCAUUAAGGAUUGUCGAUUGUGUCCAACACUU----A
.((((.........))))((.((((((.((..((....))...(((((((((((....))))..))))))).)).))))))))......----. ( -19.50)
>DroYak_CAF1 25140 90 - 1
UGCGAUUGACAUUUUCACAGAGACGCACUCUAGAUCUUUCAAUGCAAUUCGAUGACCUCAUUAAGGAUUGCCGAUUGCUUCCACCACUU----A
.(((((((..........((((.....))))............(((((((((((....))))..))))))))))))))...........----. ( -19.30)
>consensus
UGCGAUUGACAUUUUCACAGAGACGCACUCUAGAUCUUUCAAUGCAAUUCGAUGACCUCAUUAAGGAUUGCCGAUUGCAUCCACCACUU____A
.(((((((..........((((.....))))............(((((((((((....))))..))))))))))))))................ (-15.36 = -15.52 +   0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:39:56 2006