Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 8,425,393 – 8,425,498 |
Length | 105 |
Max. P | 0.512616 |
Location | 8,425,393 – 8,425,498 |
---|---|
Length | 105 |
Sequences | 5 |
Columns | 106 |
Reading direction | forward |
Mean pairwise identity | 89.89 |
Mean single sequence MFE | -23.80 |
Consensus MFE | -17.21 |
Energy contribution | -17.61 |
Covariance contribution | 0.40 |
Combinations/Pair | 1.00 |
Mean z-score | -1.68 |
Structure conservation index | 0.72 |
SVM decision value | -0.04 |
SVM RNA-class probability | 0.512616 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 8425393 105 + 22407834 AUUUAAAUUGAUAUGAUGUAUUUGUGCCGAGUGCACGAUUGUUUGCUUUCGGUGCAAAUUUAAAGCUUUUGGUUUUAUAUCUAAUCGGAAUUCCAAAA-CCCUAAG .........(((..((((((((((..(((((.(((........))).)))))..)))))..(((((.....))))))))))..)))((....))....-....... ( -25.40) >DroSec_CAF1 23499 104 + 1 AUUUAAAUUGAUAUGAUGUAUUUGUGCCGAGUGCACGAUUGUUUGCUUUCGGUGCAAAUUUAAAGCUUUUUGUUUUAUUUCUAAUCAGAAUUACAA-A-CCCUAAG .......(((((..((...(((((..(((((.(((........))).)))))..))))).((((((.....))))))..))..)))))........-.-....... ( -23.00) >DroSim_CAF1 23394 104 + 1 AUUUAAAUUGAUAUGAUGUAUUUGUGCCGAGUGCACGAUUGUUUGCUUUCGGUGCAAAUUUGUAGCAUUUUGUUUUAUAUCUAAUCGGAAUUACAA-A-CCCUAAG .......(((((..((((((((((..(((((.(((........))).)))))..)))).....(((.....))).))))))..)))))........-.-....... ( -22.70) >DroEre_CAF1 23783 105 + 1 AUUUAAAUUGAUAUGAUGUACUUGUGCCGAGUGCACGAUUGUUUGCUUUCGGUGCAAAUUUGAAUCUUUUGGUUUUAUUUCUAAUGGGGAUUCCAA-AGCCUAAGG (((((((((.............((..(((((.(((........))).)))))..)))))))))))((((.((((((((..(.....)..))...))-)))).)))) ( -23.61) >DroYak_CAF1 23917 96 + 1 AUUUAAAUUGAUAUGAUGUAUUUGUGCCGAGUGCACGAUUGUUUGCUUUCGGUGCAAA-------CUUUUGGUUUUAUUUCUAAUCGGAAUGCCAA---CCUUAAG ....................((((..(((((.(((........))).)))))..))))-------(((..((((.((((((.....))))))..))---))..))) ( -24.30) >consensus AUUUAAAUUGAUAUGAUGUAUUUGUGCCGAGUGCACGAUUGUUUGCUUUCGGUGCAAAUUUAAAGCUUUUGGUUUUAUUUCUAAUCGGAAUUCCAA_A_CCCUAAG ....((((..(........(((((..(((((.(((........))).)))))..))))).........)..))))............................... (-17.21 = -17.61 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:39:55 2006