Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 8,423,482 – 8,423,578 |
Length | 96 |
Max. P | 0.534220 |
Location | 8,423,482 – 8,423,578 |
---|---|
Length | 96 |
Sequences | 5 |
Columns | 116 |
Reading direction | reverse |
Mean pairwise identity | 87.04 |
Mean single sequence MFE | -25.57 |
Consensus MFE | -20.00 |
Energy contribution | -19.84 |
Covariance contribution | -0.16 |
Combinations/Pair | 1.06 |
Mean z-score | -1.48 |
Structure conservation index | 0.78 |
SVM decision value | 0.00 |
SVM RNA-class probability | 0.534220 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 8423482 96 - 22407834 CGUUUGGGAGAUGCUGGCCUGGCUUGUUAAAGCGCAGGCGCAUAGCCACUAUUC-CCAUUCCC-------------------AUUAUCCGUUUCUCCAUUCCAAUAAAACCAUUUG .(..((((((..(((((((((((((....)))).)))))...)))).....)))-)))..)..-------------------.................................. ( -23.80) >DroSec_CAF1 21683 96 - 1 CGUUUGGGAGAUGCUGGCCUGGCUUGUUAAAGCGCAGGCGCAUAGCCACUAUUCCCCAUUCCC-------------------AUUAUCCG-UUCUCCAUUCCAAUAAAACCAUUUG .(..((((..(((.((((.((((((((......)))))).))..)))).)))..))))..)..-------------------........-......................... ( -23.70) >DroSim_CAF1 21498 115 - 1 CGUUUGGGAGAUGCUGGCCUGGCUUGUUAAAGCGCAGGCGCAUAGCCACUAUUUCCCAUUCCCAUUCCCAUUCCCAUUAUCCAUUAUCCG-UUCUCCAUUCCAAUAAAACCAUUUG .(..(((((((((.((((.((((((((......)))))).))..)))).)))))))))..).............................-......................... ( -27.00) >DroEre_CAF1 21916 95 - 1 CGUUUGGGAGAUGCCGGGCUGGCUUGUUAAAGCGCAGGCGCGGAGCCACCAUUC-CCAUUCCC-------------------AUUCUCCG-UUCUCCAUUCCAAUAAACCCAUUUG ......(((((.(((..((..((((....)))))).)))((((((.........-........-------------------...)))))-))))))................... ( -24.25) >DroYak_CAF1 21956 99 - 1 CGUUUGGGAGAUGCUGGCCUGGCUUGUUAAAGCGCAGGCGCAGAGCCACCAUUU-CCAUUCCC---------------AUCCAUUCUCCG-UUCUCCAUUCCAAUAAACCCAUUUG .(..(((((((((.(((((((((((((......)))))).))).)))).)))).-....))))---------------)..)........-......................... ( -29.10) >consensus CGUUUGGGAGAUGCUGGCCUGGCUUGUUAAAGCGCAGGCGCAUAGCCACUAUUC_CCAUUCCC___________________AUUAUCCG_UUCUCCAUUCCAAUAAAACCAUUUG ......(((((...(((..((((((....)))).))(((.....)))........................................)))..)))))................... (-20.00 = -19.84 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:39:50 2006