Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 8,423,345 – 8,423,436 |
Length | 91 |
Max. P | 0.543461 |
Location | 8,423,345 – 8,423,436 |
---|---|
Length | 91 |
Sequences | 6 |
Columns | 112 |
Reading direction | reverse |
Mean pairwise identity | 80.68 |
Mean single sequence MFE | -21.47 |
Consensus MFE | -15.45 |
Energy contribution | -15.48 |
Covariance contribution | 0.03 |
Combinations/Pair | 1.24 |
Mean z-score | -1.18 |
Structure conservation index | 0.72 |
SVM decision value | 0.02 |
SVM RNA-class probability | 0.543461 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 8423345 91 - 22407834 ----------------ACAUUGUUGUGCAAUUAAAAUUGAAAAG-----UUUCACCAUUUGUGGUAGGGACAAUGCCUUAGAGCAGAGUGCAUGCGCACCAGCGCAAUUGAA ----------------.((..(((((((...............(-----(..(((((....)))).)..))..(((......)))(.((((....))))).))))))))).. ( -23.70) >DroSec_CAF1 21550 91 - 1 ----------------ACAUUGUUGUGCAAUUAAAAUUGAAAAG-----UUUCACCAUUUGUUGUAGGGACAAUGCCUGAGAGCAGAGUGCAUGCGCACCAGCGCAAUUGAA ----------------.((..(((((((.....(((((....))-----))).....((((((.(.(((......))).).))))))((((....))))..))))))))).. ( -21.80) >DroSim_CAF1 21365 91 - 1 ----------------ACAUUGUUGUGCAAUUAAAAUUGAAAAG-----UUUCACCAUUUGUGGUAGGGACAAUGCCUGAGAGCAGAGUGCAUGCGCACCAGCGCAAUUGAA ----------------.((..(((((((...............(-----(..(((((....)))).)..))..(((......)))(.((((....))))).))))))))).. ( -23.70) >DroEre_CAF1 21783 91 - 1 ----------------ACAUUGUUGUGCAAUUAAAAUUGAAAAG-----UUUCACUAUUUGUGGUAGGGACAAUGUCUGAGAGAAGAGUGCAUGCGCACCAGCGCAAUUGAA ----------------.((..(((((((...............(-----(..(((((....)))).)..))....(((......)))((((....))))..))))))))).. ( -20.30) >DroWil_CAF1 42955 111 - 1 AAUUCUAUACAAAAACGCAUUGUUGUACAAUUAAAAUUGAAGUGAAGAAACGCACAAGGAAAAGUAA-UAUAAUAACGGAACCCUAAGUGCAUCAGCACCCGUACAAUUGAA .....................(((((((.............(((........)))..((........-.........((...))...((((....))))))))))))).... ( -14.90) >DroYak_CAF1 21823 91 - 1 ----------------ACAUUGUUGUGCAAUUAAAAUUGAAAAG-----UUUCACCAUUUGUGGUAGGGACAAUGUCUGAGAGCAGAGUGCAUGCGCACCAGCGCAAUUGAA ----------------.((..(((((((...............(-----(..(((((....)))).)..))....((((....))))((((....))))..))))))))).. ( -24.40) >consensus ________________ACAUUGUUGUGCAAUUAAAAUUGAAAAG_____UUUCACCAUUUGUGGUAGGGACAAUGCCUGAGAGCAGAGUGCAUGCGCACCAGCGCAAUUGAA .................((..(((((((.............................(((((....(((......)))....)))))((((....))))..))))))))).. (-15.45 = -15.48 + 0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:39:49 2006