Locus 293

Sequence ID	2L_DroMel_CAF1
Location	840,612 – 840,722
Length	110
Max. P	0.864253

overview

Window 4

Location	840,612 – 840,722
Length	110
Sequences	6
Columns	120
Reading direction	reverse
Mean pairwise identity	74.21
Mean single sequence MFE	-38.43
Consensus MFE	-14.88
Energy contribution	-14.80
Covariance contribution	-0.08
Combinations/Pair	1.36
Mean z-score	-2.26
Structure conservation index	0.39
SVM decision value	0.84
SVM RNA-class probability	0.864253
Prediction	RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 840612 110 - 22407834
AAACUGAAACCG---CCGAGAUUCGAGAUUCGA-GAUUCAAGAUCCGAGAUCUCUGAUCGCGGGU--CCCGGGUCUCAUCCGGCGG---AGACGGUGACUAUGUGGAAACUGUGAGGUG-
..((((...(((---(((.(((..((((((((.-(((((..((((.((....)).))))..))))--).)))))))))))))))))---...))))..((....(....)....))...- ( -42.30)
>DroSec_CAF1 6014 100 - 1
AAACCGAAACCG---CCGAGAUUU-------GA-GAUUCAAGAUCCGAGAUCUCUGAUCGCGGGA--CCC--AUCUCAUCCGGCGG---AGACGGAGACUCUGAGGAAACU-CGGGGUG-
...(((...(((---(((.((..(-------((-(((....(.((((.((((...)))).)))).--)..--))))))))))))))---...)))..((((((((....))-)))))).- ( -45.20)
>DroSim_CAF1 6691 100 - 1
AAACCGAAACCG---CCGAGAUUC-------GA-GAUUCAAGAUCCGAGAUCUCUGAUCGCGGGA--CCC--AUCUCAUCCGGCGG---AGACGGAGACUCUGUGGAAACU-CGGGGUG-
...(((...(((---(((.(((..-------((-(((....(.((((.((((...)))).)))).--)..--))))))))))))))---...)))..((((((.(....).-)))))).- ( -40.50)
>DroEre_CAF1 5732 93 - 1
AAACCGAAACCG---CCGAGAUUU-------G--------UGAUCCGAGAUCUCUGAUCGUGGUG--CCC--AUCUCAUCCGCCGG---AGGCGGACGCUUUGUGGAUACU-CGGGGCA-
........((((---(.(((((((-------.--------.......))))))).....)))))(--(((--.....((((((..(---((((....)))))))))))...-..)))).- ( -31.70)
>DroYak_CAF1 4834 93 - 1
AAACCGAAACCG---CCGAGAUUU-------C--------AGAUCCGAGAUCUCUGAUCGUGGUG--CCC--AUCUCAUCCGCCGG---AGACGGCGACGUUGUGGAAACU-CGGCGCA-
..........((---(((((.(((-------(--------(((((.((....)).))))((((..--.))--))......(((((.---...)))))......))))).))-)))))..- ( -36.00)
>DroAna_CAF1 4674 116 - 1
AAACCGAAACCGAAACCGAAACCGAAACAGCGACGAUCCGAGAUCCAAGAUCUCAGAUCUGGGAAUCUCC--AUC-CAUCCGGUGGCUCGGACGGAGGCUGUGUGGAAAUU-CCCAGAAG
....((....((....))....((......)).)).((.((((((...)))))).))(((((((((.(((--(((-(.(((((....))))).))).......)))).)))-)))))).. ( -34.91)
>consensus
AAACCGAAACCG___CCGAGAUUU_______GA_GAUUCAAGAUCCGAGAUCUCUGAUCGCGGGA__CCC__AUCUCAUCCGGCGG___AGACGGAGACUCUGUGGAAACU_CGGGGUA_
...(((...(((.....(((((...................((((.((....)).))))..((.....))..)))))......)))......)))..(((((..(....)...))))).. (-14.88 = -14.80 +  -0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:32:12 2006