Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 840,612 – 840,722 |
Length | 110 |
Max. P | 0.864253 |
Location | 840,612 – 840,722 |
---|---|
Length | 110 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 74.21 |
Mean single sequence MFE | -38.43 |
Consensus MFE | -14.88 |
Energy contribution | -14.80 |
Covariance contribution | -0.08 |
Combinations/Pair | 1.36 |
Mean z-score | -2.26 |
Structure conservation index | 0.39 |
SVM decision value | 0.84 |
SVM RNA-class probability | 0.864253 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 840612 110 - 22407834 AAACUGAAACCG---CCGAGAUUCGAGAUUCGA-GAUUCAAGAUCCGAGAUCUCUGAUCGCGGGU--CCCGGGUCUCAUCCGGCGG---AGACGGUGACUAUGUGGAAACUGUGAGGUG- ..((((...(((---(((.(((..((((((((.-(((((..((((.((....)).))))..))))--).)))))))))))))))))---...))))..((....(....)....))...- ( -42.30) >DroSec_CAF1 6014 100 - 1 AAACCGAAACCG---CCGAGAUUU-------GA-GAUUCAAGAUCCGAGAUCUCUGAUCGCGGGA--CCC--AUCUCAUCCGGCGG---AGACGGAGACUCUGAGGAAACU-CGGGGUG- ...(((...(((---(((.((..(-------((-(((....(.((((.((((...)))).)))).--)..--))))))))))))))---...)))..((((((((....))-)))))).- ( -45.20) >DroSim_CAF1 6691 100 - 1 AAACCGAAACCG---CCGAGAUUC-------GA-GAUUCAAGAUCCGAGAUCUCUGAUCGCGGGA--CCC--AUCUCAUCCGGCGG---AGACGGAGACUCUGUGGAAACU-CGGGGUG- ...(((...(((---(((.(((..-------((-(((....(.((((.((((...)))).)))).--)..--))))))))))))))---...)))..((((((.(....).-)))))).- ( -40.50) >DroEre_CAF1 5732 93 - 1 AAACCGAAACCG---CCGAGAUUU-------G--------UGAUCCGAGAUCUCUGAUCGUGGUG--CCC--AUCUCAUCCGCCGG---AGGCGGACGCUUUGUGGAUACU-CGGGGCA- ........((((---(.(((((((-------.--------.......))))))).....)))))(--(((--.....((((((..(---((((....)))))))))))...-..)))).- ( -31.70) >DroYak_CAF1 4834 93 - 1 AAACCGAAACCG---CCGAGAUUU-------C--------AGAUCCGAGAUCUCUGAUCGUGGUG--CCC--AUCUCAUCCGCCGG---AGACGGCGACGUUGUGGAAACU-CGGCGCA- ..........((---(((((.(((-------(--------(((((.((....)).))))((((..--.))--))......(((((.---...)))))......))))).))-)))))..- ( -36.00) >DroAna_CAF1 4674 116 - 1 AAACCGAAACCGAAACCGAAACCGAAACAGCGACGAUCCGAGAUCCAAGAUCUCAGAUCUGGGAAUCUCC--AUC-CAUCCGGUGGCUCGGACGGAGGCUGUGUGGAAAUU-CCCAGAAG ....((....((....))....((......)).)).((.((((((...)))))).))(((((((((.(((--(((-(.(((((....))))).))).......)))).)))-)))))).. ( -34.91) >consensus AAACCGAAACCG___CCGAGAUUU_______GA_GAUUCAAGAUCCGAGAUCUCUGAUCGCGGGA__CCC__AUCUCAUCCGGCGG___AGACGGAGACUCUGUGGAAACU_CGGGGUA_ ...(((...(((.....(((((...................((((.((....)).))))..((.....))..)))))......)))......)))..(((((..(....)...))))).. (-14.88 = -14.80 + -0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:32:12 2006