Locus 2929

Sequence ID	2L_DroMel_CAF1
Location	8,421,632 – 8,421,742
Length	110
Max. P	0.999669

overview

Window 6

Location	8,421,632 – 8,421,742
Length	110
Sequences	5
Columns	116
Reading direction	forward
Mean pairwise identity	96.44
Mean single sequence MFE	-30.96
Consensus MFE	-26.74
Energy contribution	-27.18
Covariance contribution	0.44
Combinations/Pair	1.03
Mean z-score	-1.81
Structure conservation index	0.86
SVM decision value	1.39
SVM RNA-class probability	0.949728
Prediction	RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 8421632 110 + 22407834
UUGAAGAUAUGAUAAAAACCGGCUAGAUAAGCCGGUCGUAUCUG------UAUCUGCUGUCAUGUUGUGAAAAACUUGACUGGAGCACGUCUCCACAAUGUGUACACUCUGCAAGU
....((((((((((...(((((((.....)))))))..)))).)------)))))((.((((.(((......))).))))(((((.....)))))...............)).... ( -32.70)
>DroSec_CAF1 19802 110 + 1
UUGAAGAUAUGAUAAAAACCGGCUAGAUAAGCCGGUCGUAUCUG------UAUCUACUGUCAUGUUGUGAAAAACUUGACUGGAGCACGUCUCCACAAUGUGUACACUCUGCAAGU
....((((((((((...(((((((.....)))))))..)))).)------)))))...((((.(((......))).))))(((((.....))))).....((((.....))))... ( -31.70)
>DroSim_CAF1 19620 116 + 1
UUGAAGAUAUGAUAAAAACCGGCUAGAUAAGCCGUUCGUAUCUGUAUCUGUAUCUGCUGUCAUGUUGUGAAAAACUUGACUGGAGCACGUCUCCACAAUGUGUACACUCUGCAAGU
....((((((((((..(((.((((.....)))))))..)))).)))))).....(((.((((.(((......))).))))(((((.....)))))...............)))... ( -28.80)
>DroEre_CAF1 19956 110 + 1
UUGAAGAUAUGAUAAAAACCGGCUAGAUAAGCCGGUCGUAUCUG------UAUCUGCUGCCAUGUUGUGAAAAACUUGACUGGAGCACGUCUCCACAAUGUGUACACUCUGCAAGU
....((((((((((...(((((((.....)))))))..)))).)------)))))(((((...((.(((....(((((..(((((.....)))))))).)).)))))...)).))) ( -31.10)
>DroYak_CAF1 20005 110 + 1
UUGAAGAUAUGAUAAAAACCGGCUAGAUAAGCUGGUCGUAUCUG------UAUCUGCUGUCAUGUUGUGAAAAACUUGACUGGAGCACGUCUCCACAAUGUGUACACUCUGCAAGU
....((((((((((...(((((((.....)))))))..)))).)------)))))((.((((.(((......))).))))(((((.....)))))...............)).... ( -30.50)
>consensus
UUGAAGAUAUGAUAAAAACCGGCUAGAUAAGCCGGUCGUAUCUG______UAUCUGCUGUCAUGUUGUGAAAAACUUGACUGGAGCACGUCUCCACAAUGUGUACACUCUGCAAGU
....((((((((......((((((.....))))))))))))))...........(((.((((.(((......))).))))(((((.....)))))...............)))... (-26.74 = -27.18 +   0.44)

alignment

secondary structure

dotplot

Window 7

Location	8,421,632 – 8,421,742
Length	110
Sequences	5
Columns	116
Reading direction	reverse
Mean pairwise identity	96.44
Mean single sequence MFE	-31.14
Consensus MFE	-29.16
Energy contribution	-29.24
Covariance contribution	0.08
Combinations/Pair	1.06
Mean z-score	-2.41
Structure conservation index	0.94
SVM decision value	3.86
SVM RNA-class probability	0.999669
Prediction	RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 8421632 110 - 22407834
ACUUGCAGAGUGUACACAUUGUGGAGACGUGCUCCAGUCAAGUUUUUCACAACAUGACAGCAGAUA------CAGAUACGACCGGCUUAUCUAGCCGGUUUUUAUCAUAUCUUCAA
...(((..((((....)))).(((((.....)))))((((.(((......))).)))).)))((((------..((((.((((((((.....))))))))..)))).))))..... ( -32.90)
>DroSec_CAF1 19802 110 - 1
ACUUGCAGAGUGUACACAUUGUGGAGACGUGCUCCAGUCAAGUUUUUCACAACAUGACAGUAGAUA------CAGAUACGACCGGCUUAUCUAGCCGGUUUUUAUCAUAUCUUCAA
...((.(((((((..((....(((((.....)))))((((.(((......))).)))).))..)))------).((((.((((((((.....))))))))..))))...))).)). ( -33.90)
>DroSim_CAF1 19620 116 - 1
ACUUGCAGAGUGUACACAUUGUGGAGACGUGCUCCAGUCAAGUUUUUCACAACAUGACAGCAGAUACAGAUACAGAUACGAACGGCUUAUCUAGCCGGUUUUUAUCAUAUCUUCAA
..((((..((((....)))).(((((.....)))))((((.(((......))).)))).))))....(((((..((((.((((((((.....)))).)))).)))).))))).... ( -29.80)
>DroEre_CAF1 19956 110 - 1
ACUUGCAGAGUGUACACAUUGUGGAGACGUGCUCCAGUCAAGUUUUUCACAACAUGGCAGCAGAUA------CAGAUACGACCGGCUUAUCUAGCCGGUUUUUAUCAUAUCUUCAA
...(((..((((....)))).(((((.....)))))((((.(((......))).)))).)))((((------..((((.((((((((.....))))))))..)))).))))..... ( -32.30)
>DroYak_CAF1 20005 110 - 1
ACUUGCAGAGUGUACACAUUGUGGAGACGUGCUCCAGUCAAGUUUUUCACAACAUGACAGCAGAUA------CAGAUACGACCAGCUUAUCUAGCCGGUUUUUAUCAUAUCUUCAA
...(((..((((....)))).(((((.....)))))((((.(((......))).)))).)))((((------..((((.((((.(((.....))).))))..)))).))))..... ( -26.80)
>consensus
ACUUGCAGAGUGUACACAUUGUGGAGACGUGCUCCAGUCAAGUUUUUCACAACAUGACAGCAGAUA______CAGAUACGACCGGCUUAUCUAGCCGGUUUUUAUCAUAUCUUCAA
..((((..((((....)))).(((((.....)))))((((.(((......))).)))).))))...........((((.((((((((.....))))))))..)))).......... (-29.16 = -29.24 +   0.08)

alignment

secondary structure

dotplot

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:39:45 2006