Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 8,418,099 – 8,418,213 |
Length | 114 |
Max. P | 0.861189 |
Location | 8,418,099 – 8,418,213 |
---|---|
Length | 114 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 81.12 |
Mean single sequence MFE | -23.22 |
Consensus MFE | -14.32 |
Energy contribution | -16.16 |
Covariance contribution | 1.84 |
Combinations/Pair | 1.18 |
Mean z-score | -2.16 |
Structure conservation index | 0.62 |
SVM decision value | 0.83 |
SVM RNA-class probability | 0.861189 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 8418099 114 - 22407834 GGUUACUUCCAAAAUGACCAUGCUUACUUACAC-----UCAUUUCCAGGAAGUAGCUGCACGAGCAUUGAUAUAUAAUUACUAUGUUGAUAAACAAAAGGCAUG-UUCCUGGAAUCUUUC (((((.........)))))..............-----....(((((((((...(((((....))((..(((((.......)))))..))........)))...-)))))))))...... ( -24.30) >DroSec_CAF1 16132 119 - 1 GGUUACUUCCAAAGUGACCAUGCCUACUUACACACUCAUUAUUUCCAGGAAGUAGCUGCACCAGCAUUGAUAUAAAAUUACUAUGUUGAUAAACAAAAGCCCUG-UACCUGGAAUCAUUC (((((((.....))))))).......................(((((((.....((((...))))((..(((((.......)))))..))..............-..)))))))...... ( -27.60) >DroSim_CAF1 15975 119 - 1 GGUUACUUCCAAAGUGACCAUGCCCACUUACACACUCAUUAUUUCCAGGAAGUAGCUGCACCAGCAUUGAUAUAUAAUUACUAUGUUGAUAAACAAAAGCCCUG-UUCCUGGAAUCAUUC (((((((.....))))))).......................(((((((((...((((...))))((..(((((.......)))))..))..............-)))))))))...... ( -29.60) >DroEre_CAF1 16452 110 - 1 GGUUACUUUCAAAGUCACAAUGUCUACUUUCAC--UCA----UUCCAGGAAGUAGCUAAAUCACUAUUGAUACCUAAUUACUAUGUUAAUAAACAUAAGCCCUG-UUCCUAGAAUCA--- ((((....(((((((......(.((((((((..--...----.....)))))))))......))).))))...........((((((....))))))))))...-............--- ( -16.40) >DroYak_CAF1 16287 111 - 1 GGUUACUUCCAAAGUCGCAAUGUCUACUUAGAC--UCA----UUCCAGGAAGUAGCUAAACCACUAUUAAUAUCUAAUUACUAUGUUAAUAAACAAAAUCUCUCCUUUAUAGAAUCG--- ((((((((((...........((((....))))--...----.....)))))))))).......(((((((((.........)))))))))..........................--- ( -18.21) >consensus GGUUACUUCCAAAGUGACCAUGCCUACUUACAC__UCAU_AUUUCCAGGAAGUAGCUGCACCAGCAUUGAUAUAUAAUUACUAUGUUGAUAAACAAAAGCCCUG_UUCCUGGAAUCAUUC (((((((.....))))))).......................(((((((((...(((.....)))(((((((((.......)))))))))...............)))))))))...... (-14.32 = -16.16 + 1.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:39:40 2006