Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 8,417,492 – 8,417,606 |
Length | 114 |
Max. P | 0.726797 |
Location | 8,417,492 – 8,417,606 |
---|---|
Length | 114 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 84.69 |
Mean single sequence MFE | -30.23 |
Consensus MFE | -17.88 |
Energy contribution | -18.56 |
Covariance contribution | 0.68 |
Combinations/Pair | 1.08 |
Mean z-score | -2.47 |
Structure conservation index | 0.59 |
SVM decision value | 0.41 |
SVM RNA-class probability | 0.726797 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 8417492 114 - 22407834 CAAUAAACCAAUUUCAAAGAUACAU----UCGGUUGGCGACCGCUACCUGAAAUCGCAGCGAAAUAAUUCAAUUUGCUCAAAUUUCGGGAGUGG--GGAAAAUUCAGAAUGCAAACUCCA ......................(((----((.(((..(..(((((.((((((((...((((((.........))))))...)))))))))))))--.)..)))...)))))......... ( -26.50) >DroSec_CAF1 15524 120 - 1 CAAUAAACCAAUUUCAAAGAUACAUUCAUUCUGUUGCCGACCGCUACCUGAAAUCGCAGCGAAAUAAUUCGAUUUGCUCAAAUAUCGGGAGUGGUGGGGAAAUUCAGAAUGUAAACUCCA ....................(((((((......((.((.((((((.(((((.((.(((.((((....))))...)))....)).))))))))))).)).)).....)))))))....... ( -32.40) >DroSim_CAF1 15369 120 - 1 CAAUAAACCAAUUUCAAAGAUACAUUCAUUCUGUUGCCGACCGCUACCUGAAAUCGCAGCGAAAUAAUUCGAUUUGCUCAAAUUUCGGGAGUGGUGGGCAAAUUCAGAAUGUAAACUCCA ....................(((((((......(((((.((((((.((((((((.(((.((((....))))...)))....)))))))))))))).))))).....)))))))....... ( -40.40) >DroEre_CAF1 15864 113 - 1 CAAUGAACUAAUUUGAAAGAUAC-U----UCGGUUGCCGACCGCUAACUGAAAUCGCAGGGAAAUAAUUCAAUUUGCUGUAAUUUCGGGAGUGG--GGGAAAUUUAAAAGGCAUGUUCCA ....((((.............((-.----...))((((..(((((..(((((((..(((.(((.........))).)))..))))))).)))))--.............)))).)))).. ( -27.86) >DroYak_CAF1 15696 103 - 1 CAAUAAACCAAUUUCAAAGAUACAU----UCGGUUGCCGACCGCUACCUGAAAUCGCAGCGAAAUAAUUCAAUUUGUUA-AAUUUCGGGAGUGG--GGAAAAUUCGGACG---------- .......((((((((..........----((((...))))(((((.((((((((...((((((.........)))))).-.)))))))))))))--.).))))).))...---------- ( -24.00) >consensus CAAUAAACCAAUUUCAAAGAUACAU____UCGGUUGCCGACCGCUACCUGAAAUCGCAGCGAAAUAAUUCAAUUUGCUCAAAUUUCGGGAGUGG__GGAAAAUUCAGAAUGCAAACUCCA .......((....................(((.....)))(((((.((((((((...((((((.........))))))...)))))))))))))..))...................... (-17.88 = -18.56 + 0.68)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:39:36 2006