Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 8,408,165 – 8,408,261 |
Length | 96 |
Max. P | 0.765451 |
Location | 8,408,165 – 8,408,261 |
---|---|
Length | 96 |
Sequences | 6 |
Columns | 116 |
Reading direction | forward |
Mean pairwise identity | 72.26 |
Mean single sequence MFE | -17.91 |
Consensus MFE | -10.19 |
Energy contribution | -10.69 |
Covariance contribution | 0.50 |
Combinations/Pair | 1.00 |
Mean z-score | -1.53 |
Structure conservation index | 0.57 |
SVM decision value | 0.51 |
SVM RNA-class probability | 0.765451 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 8408165 96 + 22407834 GG--UUAU-UCGUGCGCAAUUACAUAC-AUUAAUAUGAUUA--ACAUAUUUUUGCGCAUUGUCCU--CGACAUACCA--G---CAUAAAUAAGAUGCCC-------AGCCAGUUCC ((--((..-..((((((((........-...((((((....--.)))))).))))))))((((..--.)))).....--(---(((.......))))..-------))))...... ( -19.10) >DroPse_CAF1 6468 95 + 1 GG--UUAU-UCGCGCGCAAUUACAUACGAUUAAUAUGAUUAAAACAUAUUUUUGCGCAAUGUCCU--CGACACACGU--G------A-ACCACAAACCA-------AUCCAGGAAC ((--(...-((((((((((............((((((.......)))))).))))))..((((..--.))))...))--)------)-))).....((.-------.....))... ( -19.12) >DroGri_CAF1 7126 102 + 1 GGUGUUAA-U-GUGCGCAAUUGCAUAC-AUUAAUAUGAUUA--ACAUAUUUUUGCGCACUCACCUGCCAACAUACCA--AGAACAGAACCACGCACUCC-------CGACCCAUCC ((((....-.-((((((((........-...((((((....--.)))))).)))))))).)))).............--....................-------.......... ( -19.00) >DroWil_CAF1 26375 100 + 1 GA--UUCUAUAUUGCGCAAUUACAUAC-AUUAAUAUGAUUA--ACAUAUUUUUGCGCAUUGUCCU--CGACAUACAA--C-------AAGAAGAACCACAAUAUUAAAGCAGAUCC ..--((((....(((((((........-...((((((....--.)))))).))))))).((((..--.)))).....--.-------.))))........................ ( -14.10) >DroAna_CAF1 6197 98 + 1 GG--UUAU-UCUUGCGCAAUUACAUAC-AUUAAUAUGAUUA--ACAUAUUGUUGCGCAUUGUCCU--UGACAUACCAUAC---CAUAACUUUAGAGCCC-------AGCCAGAUCC ((--((.(-(((((((((((.......-...((((((....--.)))))))))))))).((((..--.))))........---.........))))...-------))))...... ( -17.70) >DroPer_CAF1 6483 96 + 1 GG--UUAU-CCGCGCGCAAUUACAUACGAUUAAUAUGAUUAAAACAUAUUUUUGCGCAAUGUCCU--CGACACACGU--G------AAACCACAAACCA-------AUCCAGGAAC ((--((..-.(((((((((............((((((.......)))))).))))))..((((..--.))))...))--)------.)))).....((.-------.....))... ( -18.42) >consensus GG__UUAU_UCGUGCGCAAUUACAUAC_AUUAAUAUGAUUA__ACAUAUUUUUGCGCAUUGUCCU__CGACAUACCA__G______AAACAAGAAACCC_______AGCCAGAUCC .............((((((............((((((.......)))))).))))))..((((.....))))............................................ (-10.19 = -10.69 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:39:34 2006