Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 8,400,809 – 8,400,907 |
Length | 98 |
Max. P | 0.672306 |
Location | 8,400,809 – 8,400,907 |
---|---|
Length | 98 |
Sequences | 5 |
Columns | 98 |
Reading direction | reverse |
Mean pairwise identity | 89.29 |
Mean single sequence MFE | -26.19 |
Consensus MFE | -19.78 |
Energy contribution | -20.30 |
Covariance contribution | 0.52 |
Combinations/Pair | 1.29 |
Mean z-score | -1.71 |
Structure conservation index | 0.76 |
SVM decision value | 0.29 |
SVM RNA-class probability | 0.672306 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 8400809 98 - 22407834 UUGGUUAAUUAAUGAUUUCCAAGAACUUUGGAAUAAAGAGCUUGUCUCACGUCCUUCAUAUGAAACUGAGGGAGGAGUUCUUGGGGAAAUCUGGAUAG ...............(..(((((((((.((..((((.....))))..))(.(((((((........))))))).))))))))))..)........... ( -27.30) >DroSec_CAF1 22256 98 - 1 UUGGUUCAUUAAUGAUUUCCAAGAACUUUGGAAUAAAGAGCUUGCCUUACGUCCUUCAUAUGAAACUGAAGGAGGAGUUCUUGGGGAAUUCUGGACAG ...(((((..(((..(..(((((((((((......(((.(....))))...(((((((........))))))))))))))))))..)))).))))).. ( -28.70) >DroSim_CAF1 21416 98 - 1 UUGGUUCAUUAAUGAUUUCCAAGAACUUUGGAAUAAAGAGCUUGCCUUACGUCCUUCAUAUGAAACUGAAGGAGGAGUUCUUGGGGAAUUCUGGACAG ...(((((..(((..(..(((((((((((......(((.(....))))...(((((((........))))))))))))))))))..)))).))))).. ( -28.70) >DroEre_CAF1 21480 98 - 1 UUGGGUCAUUAAUGAUUUCCAAGAUGUUUGGAAUAAAGAGGUUGCUUCACGCCCUUUAUAUGAAACUGAGGGAGGAGUUCUUGGGAAAUUCUGGACCG ...((((...(((..(((((((((.((((.(.((((((.(((........))))))))).).))))............))))))))))))...)))). ( -24.42) >DroYak_CAF1 21936 98 - 1 UUGGGUCAUUAAUGAUUUCCAAGUAGACUGGAAUAAAGAGUUUGCCUCACGUCUUUUAUAUGAAACUGAUGGAGGAGUUCUUGAUGAAUUUUGGACCG ...((((.........(((((.......)))))..(((((....((((.((((..............))))))))..)))))...........)))). ( -21.84) >consensus UUGGUUCAUUAAUGAUUUCCAAGAACUUUGGAAUAAAGAGCUUGCCUCACGUCCUUCAUAUGAAACUGAAGGAGGAGUUCUUGGGGAAUUCUGGACAG ...............((((((((((((((........(((.....)))...(((((((........)))))))))))))))))))))........... (-19.78 = -20.30 + 0.52)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:39:31 2006