Locus 292

Sequence ID 2L_DroMel_CAF1
Location 839,209 – 839,321
Length 112
Max. P 0.994465
window463

overview

Window 3

Location 839,209 – 839,321
Length 112
Sequences 5
Columns 118
Reading direction reverse
Mean pairwise identity 91.12
Mean single sequence MFE -26.60
Consensus MFE -22.58
Energy contribution -21.82
Covariance contribution -0.76
Combinations/Pair 1.19
Mean z-score -2.26
Structure conservation index 0.85
SVM decision value 2.48
SVM RNA-class probability 0.994465
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 839209 112 - 22407834
CCACUUGAGUGGUGUUUGCCGCACACAAAAAAAA------AACAUCACGUACUGUGCUCGCCUUAGUCCGGCAAAUGCCAUGUUGAUAUUUUAAUAGGAUUAAAACGGAAUAAAUUUA
.(((....(((((((((................)------)))))))).....))).(((..((((((((((....))).((((((....)))))))))))))..))).......... ( -27.99)
>DroSec_CAF1 4192 109 - 1
CCACUUCAGUGGUGUUUGCCACACACAAA---AA------AACAUCACGUACCGUGCUCGCCUUAAUCCGGCAAAUGCCAUGUUGAUGUUUUAAUAGGAUUAAAACGGAAUAAAUUAA
.(((....(((((((((............---.)------)))))))).....))).(((..((((((((((....))).((((((....)))))))))))))..))).......... ( -27.52)
>DroSim_CAF1 4459 109 - 1
CCACUUGAGUGGUGUUUGCCACACACAAA---AA------AACAUCACGUACCGUGCUCGCCUUAAUCCGGCAAAUGCCAUGUUGAUGUUUUAAUAGGAUUAAAACGGAAUAAAUUAA
.(((....(((((((((............---.)------)))))))).....))).(((..((((((((((....))).((((((....)))))))))))))..))).......... ( -27.52)
>DroEre_CAF1 4280 114 - 1
CCACUUGAGUGCUGUUUGGCACACACAAA---AAACAUCAAACAUCACGUACCGUGCUCGCCUUAAUCC-GCAAAUGCCUAGUUGAUAUUUUAAUAGGAUUAAAACGGAAUAAAUUAU
.(((....(((.(((((((..........---.....))))))).))).....))).(((..(((((((-((....))...(((((....))))).)))))))..))).......... ( -20.36)
>DroYak_CAF1 3405 109 - 1
CCACUUGAGUGGUGUUUGCCACACACAAA---AA------AACAUCACGUUCCGUGCUCGCCUUAAUCCGGCAAAUGCCUAGUUGAUAUUUUAAUAGGAUUGAAACGGAAUAAAUUAU
........(((((((((............---.)------))))))))(((((((.......((((((((((....)))..(((((....))))).))))))).)))))))....... ( -29.62)
>consensus
CCACUUGAGUGGUGUUUGCCACACACAAA___AA______AACAUCACGUACCGUGCUCGCCUUAAUCCGGCAAAUGCCAUGUUGAUAUUUUAAUAGGAUUAAAACGGAAUAAAUUAA
........(((((....))))).......................((((...)))).(((..((((((((((....)))..(((((....))))).)))))))..))).......... (-22.58 = -21.82 +  -0.76) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:32:11 2006