Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 8,393,656 – 8,393,776 |
Length | 120 |
Max. P | 0.563020 |
Location | 8,393,656 – 8,393,776 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 75.63 |
Mean single sequence MFE | -34.23 |
Consensus MFE | -13.60 |
Energy contribution | -14.72 |
Covariance contribution | 1.12 |
Combinations/Pair | 1.17 |
Mean z-score | -1.80 |
Structure conservation index | 0.40 |
SVM decision value | 0.06 |
SVM RNA-class probability | 0.563020 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 8393656 120 - 22407834 CAAAAAAAAGUACUGGGUAGAUAUCAACAGCCGUGCCAACGAUGGAGCGUCCUGGAUUUCUACACUAUCCGGAAGGGAUGUACCAUUUCUGAAAUGGAAGCCAAAUCUGGCCACAAAUAU .............(((.(((((........((((..((..(((((.(((((((((((.........))))....))))))).)))))..))..)))).......))))).)))....... ( -31.76) >DroSec_CAF1 15117 118 - 1 --AAAAGAACUACUGGGUGGACAUCAACAGCCGUCCCAGCGAUGGGGGGUCCUGGACUUCAACACUAUCCGGAAGGGAUGCUACAUUUCUGAAAUGGAAGCCAAAUCUGCCCGAAAAUAU --...........((((..((........(((.(((((....))))))))..(((.((((.......(((....)))......((((.....)))))))))))..))..))))....... ( -34.10) >DroSim_CAF1 14202 118 - 1 --AAAAGAACUACUGGGUGGACAUCAACAGCCGUCCCAGCGAUGGGGGGUCCUGGACUUCAACACUAUCCGGAAGGGAUGCUACAUUUCUGAAAUGGAAGCCAAAUCUGCCCGCAAAUAU --............(((..((........(((.(((((....))))))))..(((.((((.......(((....)))......((((.....)))))))))))..))..)))........ ( -34.00) >DroEre_CAF1 14396 120 - 1 CAGCAAUCAGUACUGGGUGGACAUCACCAACCGCCACGAAGAUGGGGCGCCCUUCCUUUCCGCUCUAUCCGGAAGGAAAGCUCCACUUCUGAAAUGGAAGUCCAAAAAGUCCACAAAUAC (((.........))).((((((............((.((((.((((((....((((((.(((.......))))))))).))))))))))))...(((....)))....))))))...... ( -37.70) >DroYak_CAF1 14453 117 - 1 CGACUAUCGCUACUGGGUGGACUUGAAUAGCCGUCCAAAAGAUGAUGGUAUCUUCACAUCUACACUAACCGGAAGGGAAGCUCCAUUUUUAAAAUGGAAGUCAAAGCAG---ACCAAUGU .((((...(((..((((((((..((((..((((((........))))))...))))..))))).))).((....))..)))((((((.....))))))))))...(((.---.....))) ( -33.60) >consensus C_AAAAGAACUACUGGGUGGACAUCAACAGCCGUCCCAACGAUGGGGGGUCCUGGACUUCAACACUAUCCGGAAGGGAUGCUCCAUUUCUGAAAUGGAAGCCAAAUCUGCCCACAAAUAU ............((((((((..........(((((.....)))))((....))...........))))))))...((....((((((.....))))))..)).................. (-13.60 = -14.72 + 1.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:39:29 2006