Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 8,393,002 – 8,393,162 |
Length | 160 |
Max. P | 0.957887 |
Location | 8,393,002 – 8,393,122 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 94.44 |
Mean single sequence MFE | -24.60 |
Consensus MFE | -21.20 |
Energy contribution | -21.20 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.07 |
Mean z-score | -2.55 |
Structure conservation index | 0.86 |
SVM decision value | 0.80 |
SVM RNA-class probability | 0.853623 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 8393002 120 - 22407834 UACAUUGCCAAGUCCACAAACGCCGCAAAAUACAAUCGAUCAGAUUGGUAUUAACCAGAAUUAUUGGUUUACAUACAACGCGCUUAAACAAAACGAAACAUUGGCAAUUAUUGAUACAAU ...((((((((((......))((.((......(((((.....)))))((((.((((((.....))))))...))))...)))).................))))))))............ ( -24.00) >DroSec_CAF1 14478 120 - 1 UACAUUGCCAAGUCCACAAAAGCCACAAAAUACAAUCGAUCAGAUUGGUGGUAACCAAAACUAUUGGUUCACAUACAACGCGCUUAGACAAAACGAAACACUGGCAAUUAUUGAUGCAAU ...(((((((.(((.....(((((........(((((.....)))))(((..((((((.....))))))..))).....).)))).))).....(.....))))))))............ ( -23.00) >DroSim_CAF1 13563 120 - 1 UACAUUGCCAAGUCCACAAAAGCCGCAAAAUACAAUCGAUCAGAUUGGUGUUAACCAAAAUUAUUGGUUCACAUACAACGCGCUUAGACAAAACGAAACACUGGCAAUUAUUGAUGCAAU ...(((((((.(((.....((((.((......(((((.....)))))((((.((((((.....)))))).)))).....)))))).))).....(.....))))))))............ ( -26.80) >consensus UACAUUGCCAAGUCCACAAAAGCCGCAAAAUACAAUCGAUCAGAUUGGUGUUAACCAAAAUUAUUGGUUCACAUACAACGCGCUUAGACAAAACGAAACACUGGCAAUUAUUGAUGCAAU ...(((((((.(....)..((((.((......(((((.....)))))(((..((((((.....))))))))).......))))))................)))))))............ (-21.20 = -21.20 + 0.00)
Location | 8,393,042 – 8,393,162 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 92.78 |
Mean single sequence MFE | -34.57 |
Consensus MFE | -31.32 |
Energy contribution | -30.77 |
Covariance contribution | -0.55 |
Combinations/Pair | 1.10 |
Mean z-score | -2.73 |
Structure conservation index | 0.91 |
SVM decision value | 1.48 |
SVM RNA-class probability | 0.957887 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 8393042 120 - 22407834 AUCUCAGUGGUGGGCAGCAGGACAUUCCGAACGGAAAGGCUACAUUGCCAAGUCCACAAACGCCGCAAAAUACAAUCGAUCAGAUUGGUAUUAACCAGAAUUAUUGGUUUACAUACAACG ......((((((.......((((.((((....)))).(((......)))..)))).....))))))......(((((.....)))))((((.((((((.....))))))...)))).... ( -35.50) >DroSec_CAF1 14518 120 - 1 UAGUCGGUGGUGGGCAGCAGGACAUUCCGAACGGAAAGGCUACAUUGCCAAGUCCACAAAAGCCACAAAAUACAAUCGAUCAGAUUGGUGGUAACCAAAACUAUUGGUUCACAUACAACG ..((.(((.((((((.........((((....)))).(((......)))..))))))....)))))......(((((.....)))))(((..((((((.....))))))..)))...... ( -36.40) >DroSim_CAF1 13603 120 - 1 UAGUCAGUGGUGGGCAGCAGGACAUUCCAAACGGAAACGCUACAUUGCCAAGUCCACAAAAGCCGCAAAAUACAAUCGAUCAGAUUGGUGUUAACCAAAAUUAUUGGUUCACAUACAACG ......((((..(((((..((.....))...((....)).....)))))....))))...............(((((.....)))))((((.((((((.....)))))).))))...... ( -31.80) >consensus UAGUCAGUGGUGGGCAGCAGGACAUUCCGAACGGAAAGGCUACAUUGCCAAGUCCACAAAAGCCGCAAAAUACAAUCGAUCAGAUUGGUGUUAACCAAAAUUAUUGGUUCACAUACAACG ......(((((........((((.((((....)))).(((......)))..))))......)))))......(((((.....)))))(((..((((((.....)))))))))........ (-31.32 = -30.77 + -0.55)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:39:27 2006